Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0466
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen prot...    33   0.15 
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    33   0.26 
AL023844-4|CAA19529.1|  208|Caenorhabditis elegans Hypothetical ...    31   0.60 
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    31   0.79 
U53153-2|AAQ91899.1|  422|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U53153-1|AAC69039.4|  715|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z74031-6|CAB54239.1|  227|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z92803-10|CAB07246.1|  449|Caenorhabditis elegans Hypothetical p...    28   7.3  
Z74473-5|CAI79195.1|  245|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z35597-5|CAA84648.1|  450|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z14092-10|CAA78472.2| 1020|Caenorhabditis elegans Hypothetical p...    28   7.3  
AF016440-6|AAN84798.1|  525|Caenorhabditis elegans Hypothetical ...    28   7.3  
AF016440-5|AAB65904.2|  535|Caenorhabditis elegans Hypothetical ...    28   7.3  
U50197-2|AAA91255.2|  624|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin fami...    27   9.7  

>AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen protein
           70 protein.
          Length = 530

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
 Frame = +1

Query: 64  ETVPWACKGQYEKPCQKLDGNTTYTMSYLDAKSDCRRQP----ILPTACSNPVSASKR-F 228
           ETVP A +   + PC      TT T +   A   C   P      P A + P + + R +
Sbjct: 274 ETVPPAAQTTPQPPCTPRTTTTTTTTTTTTALPPCVYTPAPPATAPPATATPATQTPRTY 333

Query: 229 ETQTIYKNSIYRPRATIPTPVKPSP 303
            T T  K ++ +   T+P   +P+P
Sbjct: 334 STTTPIKTTVPQQWTTLPPGPEPTP 358


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
 Frame = +3

Query: 351 VVVPTEPG-VRDAVXSGPATTTCGVRVPCRT-SPRNDTTTCPSRLYSGSRSNRLTVPLRR 524
           V VPT P  V     + PA  T        T +P   TTT P    +GS + + T P+ +
Sbjct: 484 VTVPTTPTPVPTTTNTPPANPTTATPTTVGTMTPSTGTTTVPVPTTTGSPTTQTTAPVTK 543

Query: 525 TTV*KSDRESXVVFGPGTSAP 587
            TV  S  ++       TS P
Sbjct: 544 PTVPSSTTQTAPPVTTPTSQP 564


>AL023844-4|CAA19529.1|  208|Caenorhabditis elegans Hypothetical
           protein Y48A6B.5 protein.
          Length = 208

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +1

Query: 82  CKGQYEKPCQKLDGNTTYTMSYLDAKSDCRRQPILPTACSNPVSA 216
           C+G++ +P QK+D NT   +S    K++ R+   +P  C+ P  +
Sbjct: 164 CRGRFGEPMQKVDWNT--VVSTRTGKTEPRKMAKVPQKCTLPTQS 206


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
 Frame = +1

Query: 151  DAKSDCRRQPILPTACSNP-------VSASKRFETQTIYKNSIYRPRATIPTPVKPSPNI 309
            ++ S  R QP L  + S P       ++A+K+ E Q  YK  + +P+AT P P+ P    
Sbjct: 2916 ESASTTRVQPALVVSHSTPEPVQLTRMAAAKKSE-QKEYKTPVAKPKATAPPPITPKAAS 2974

Query: 310  IASTAQ 327
            I    Q
Sbjct: 2975 IRPATQ 2980


>U53153-2|AAQ91899.1|  422|Caenorhabditis elegans Hypothetical
           protein T19A5.3b protein.
          Length = 422

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = -1

Query: 526 VRRSGTVSRFERLPEYRRLGHVVVSLRGDVLHGTLT--PHVV-VAGPXSTASRTPGSVGT 356
           +RR G  +    +PE   L   + + R    +GT T  P    +  P +TASR P +  T
Sbjct: 184 IRRPGEKAELP-MPEDPNLTPFMNNARAKFGYGTTTLPPETTTIYVPPTTASRRPTTTTT 242

Query: 355 TTFAPCPLPFELS 317
           TT AP    F +S
Sbjct: 243 TTEAPVEASFGIS 255


>U53153-1|AAC69039.4|  715|Caenorhabditis elegans Hypothetical
           protein T19A5.3a protein.
          Length = 715

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = -1

Query: 526 VRRSGTVSRFERLPEYRRLGHVVVSLRGDVLHGTLT--PHVV-VAGPXSTASRTPGSVGT 356
           +RR G  +    +PE   L   + + R    +GT T  P    +  P +TASR P +  T
Sbjct: 252 IRRPGEKAELP-MPEDPNLTPFMNNARAKFGYGTTTLPPETTTIYVPPTTASRRPTTTTT 310

Query: 355 TTFAPCPLPFELS 317
           TT AP    F +S
Sbjct: 311 TTEAPVEASFGIS 323


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = +3

Query: 405 TTTCGVRVPCRTSPRNDTTTCPSRLYSGSRSNRLTVPLRRTTV*KSDRESXVVFGPGTSA 584
           TTT  V      +P   TTT P    +GS + + T P+ + TV  S  ++       TS 
Sbjct: 560 TTTKPVVTTNSVTPSTGTTTVPVPTTTGSPTTQTTAPVTKPTVPSSTTQTAPPVTTPTSQ 619

Query: 585 P 587
           P
Sbjct: 620 P 620


>Z74031-6|CAB54239.1|  227|Caenorhabditis elegans Hypothetical
           protein F32D8.5b protein.
          Length = 227

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
 Frame = -1

Query: 550 SRSDFQTVVRRSGTVSRF----ERLP----EYRRLGHVVVSLRGDVLHGT-LTPHVVVA 401
           S S+FQ  VR  GT S+F    E LP    +   LGH ++  +G +  G+  TPH VVA
Sbjct: 14  SSSNFQKCVRSLGTTSKFSGNVEVLPLSKIDKDDLGHSILIHKGTLPPGSQKTPHDVVA 72


>Z92803-10|CAB07246.1|  449|Caenorhabditis elegans Hypothetical
           protein K01G5.7 protein.
          Length = 449

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 318 DSSNGRGHGAKVVVPTEPGVRDAVXSGP 401
           +++NG+     V+V  EPG  D+V SGP
Sbjct: 53  EANNGKYVPRAVLVDLEPGTMDSVRSGP 80


>Z74473-5|CAI79195.1|  245|Caenorhabditis elegans Hypothetical
           protein F56H9.6 protein.
          Length = 245

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/67 (25%), Positives = 26/67 (38%)
 Frame = +3

Query: 405 TTTCGVRVPCRTSPRNDTTTCPSRLYSGSRSNRLTVPLRRTTV*KSDRESXVVFGPGTSA 584
           TTT        T+P   TTT P+   S + +   T P   T+   +   +     P T+ 
Sbjct: 66  TTTSTTSTTTTTTPTTTTTTTPTTTTSTTSTTTTTTPTTTTSTTTTTTTTTTTATPTTTT 125

Query: 585 PTGIVCS 605
            T   C+
Sbjct: 126 TTMPPCN 132


>Z35597-5|CAA84648.1|  450|Caenorhabditis elegans Hypothetical
           protein C36E8.5 protein.
          Length = 450

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 318 DSSNGRGHGAKVVVPTEPGVRDAVXSGP 401
           +++NG+     V+V  EPG  D+V SGP
Sbjct: 53  EANNGKYVPRAVLVDLEPGTMDSVRSGP 80


>Z14092-10|CAA78472.2| 1020|Caenorhabditis elegans Hypothetical
           protein R107.6 protein.
          Length = 1020

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +3

Query: 120 RKYDIHNE-LLGREKRLSSTTHLTDCL 197
           R   +H E ++GRE+ LS    LTDCL
Sbjct: 68  RSMVVHGEDVIGREQLLSQLVRLTDCL 94


>AF016440-6|AAN84798.1|  525|Caenorhabditis elegans Hypothetical
           protein F29G9.2b protein.
          Length = 525

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
 Frame = +1

Query: 55  MKKETVPWACKGQYEKPCQK-LDGNTTYTMSYLDAKSDCRRQPILPTACSNPVSASKRFE 231
           M  E+   A    Y KP  + +   ++ T S + + S         T  + P S   R+ 
Sbjct: 1   MSSESGSSASTVHYAKPVLRHVPMPSSTTPSSIGSSSSSSSSYASSTKQTPPRSPVIRYP 60

Query: 232 TQTIYKNSIYRPRATIPTPVKPSPNIIASTAQMEGDTVQKLSY 360
           T  + KNSI  P +++     PS  +  S  QM+  +  KL Y
Sbjct: 61  TVVVSKNSIATPSSSLTPQGTPSYAVPVSRNQMQ-YSASKLQY 102


>AF016440-5|AAB65904.2|  535|Caenorhabditis elegans Hypothetical
           protein F29G9.2a protein.
          Length = 535

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
 Frame = +1

Query: 55  MKKETVPWACKGQYEKPCQK-LDGNTTYTMSYLDAKSDCRRQPILPTACSNPVSASKRFE 231
           M  E+   A    Y KP  + +   ++ T S + + S         T  + P S   R+ 
Sbjct: 11  MSSESGSSASTVHYAKPVLRHVPMPSSTTPSSIGSSSSSSSSYASSTKQTPPRSPVIRYP 70

Query: 232 TQTIYKNSIYRPRATIPTPVKPSPNIIASTAQMEGDTVQKLSY 360
           T  + KNSI  P +++     PS  +  S  QM+  +  KL Y
Sbjct: 71  TVVVSKNSIATPSSSLTPQGTPSYAVPVSRNQMQ-YSASKLQY 112


>U50197-2|AAA91255.2|  624|Caenorhabditis elegans Hypothetical
           protein F25E2.2 protein.
          Length = 624

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
 Frame = +3

Query: 327 NGRGHGAKVVVPTEP----GVRDAVXSGPATTTCGVRVPCRTSPRNDTTTCPSRLYSGSR 494
           +G+G+  K  VPT P             P TTT     P  T+ +  TTT  +   + + 
Sbjct: 403 DGKGNSVKREVPTTPLPTTTTTTTTTPKPTTTTTTTTTPAPTTTQKPTTTTTTPAPTTTS 462

Query: 495 SNRLTVPLRRTT 530
           +  +   +  TT
Sbjct: 463 TTSIPTTIATTT 474


>AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin family
            protein 10 protein.
          Length = 2302

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 426  VPCRTSPRNDTTTCPSRLYSGSRSNRLTVPLRR 524
            VP   SPR  + T PS  Y      R+TVP+++
Sbjct: 1423 VPAHLSPRQLSPTVPSEGYEIPIERRVTVPVQK 1455


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,190,577
Number of Sequences: 27780
Number of extensions: 419987
Number of successful extensions: 1503
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1497
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)