Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0466
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.52 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   3.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   4.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   8.5  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 229 ETQTIYKNSIYRPRATIPTPVKPSP 303
           E+ + Y NS+Y   A   TP  PSP
Sbjct: 374 ESYSSYVNSMYASGAQFATPCTPSP 398


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 99  EALSKVGRKYDIHNELLGREKR 164
           ++L +  RK+ +H E L RE+R
Sbjct: 98  KSLEERERKHAVHKEQLSREQR 119


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 439 HHHATTRLRAQAVCTPGVVQTGSQYHCVEQ 528
           HHH +T  +AQA   P   Q   Q    +Q
Sbjct: 815 HHHQSTHPQAQAQAQPQQQQQQQQQQPQQQ 844


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 244 YKNSIYRPRATIPTPVKPSPNIIAST 321
           + N+IYR + T+P     S  I+ ST
Sbjct: 314 FVNTIYRRKKTVPLKKVNSKYILKST 339


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
 Frame = +1

Query: 400  LPPRHVGSGSHAEHHHATTRLRAQAVCTPGVVQTGSQYHCVEQPFEN----RTVNRXSFL 567
            +P +  GSG+H   +  +      A C P   Q GSQY     P+++     +V R S  
Sbjct: 1790 VPSQGGGSGTH---NVFSPEYDDPANCAPEEDQYGSQYGQYGAPYDHYGSRGSVGRRSVG 1846

Query: 568  DPGRVPLPESYAP 606
                +P+  S  P
Sbjct: 1847 SARNIPVSGSPEP 1859


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/17 (47%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = +1

Query: 265 PRA-TIPTPVKPSPNII 312
           PR  ++PTPV P+P  +
Sbjct: 151 PRGGSLPTPVTPTPTTV 167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,032
Number of Sequences: 438
Number of extensions: 5104
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)