Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0466
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1...    29   3.9  
At5g25820.1 68418.m03064 exostosin family protein contains Pfam ...    28   5.1  
At4g10150.1 68417.m01660 zinc finger (C3HC4-type RING finger) fa...    28   5.1  
At3g29385.1 68416.m03692 hypothetical protein                          28   5.1  
At1g67740.1 68414.m07730 photosystem II core complex proteins ps...    28   5.1  
At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid t...    28   6.8  
At4g18910.1 68417.m02788 aquaglyceroporin / NOD26-like major int...    27   9.0  

>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
           non-consensus splice site at the intron:exon boundary
           (AT:exon)
          Length = 247

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
 Frame = +1

Query: 265 PRATIPTPVKPSPNIIAST-AQMEGDTVQKLSYLPNPVCVTQSXPALPPRHVGSGSHAEH 441
           P +  P P  P P   +   A +    VQ     P+P+ +  +    P +H     H  H
Sbjct: 129 PASPPPAPASPPPAPASPPPAPVSPPPVQA----PSPISLPPAPAPAPTKHKRKHKHKRH 184

Query: 442 HHA 450
           HHA
Sbjct: 185 HHA 187


>At5g25820.1 68418.m03064 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 654

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 43  PNPVMKKETVPWACKGQYEKPCQKLDGNTTYTMSYL-DAKSDCR 171
           P+PVMK ET+P   K     P +K  G+ +  + ++ D K + +
Sbjct: 200 PSPVMKNETLPTTSKVPERNPTKKNVGDASPIVRFVPDVKENAK 243


>At4g10150.1 68417.m01660 zinc finger (C3HC4-type RING finger)
           family protein RING-H2 finger protein RHA1a, Arabidopsis
           thaliana,AF078683
          Length = 236

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 559 SFLDPGRVPLPESYAPVKCYEKXTAKM 639
           S+ DP + P+PE+YAP    E    K+
Sbjct: 2   SYSDPNQNPIPETYAPSNSTESEKLKL 28


>At3g29385.1 68416.m03692 hypothetical protein
          Length = 218

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 102 ALSKVGRKYDIHNELLGREKRLSSTTHLTDCLLQPCLRF 218
           A + +  K D +  +   ++RL S+THL   LLQP   F
Sbjct: 43  ATNTLSEKVDTNEAISPSKRRLLSSTHLMQQLLQPAPTF 81


>At1g67740.1 68414.m07730 photosystem II core complex proteins psbY,
           chloroplast (PSBY) / L-arginine metabolising enzyme
           identical to SP:O49347 Photosystem II core complex
           proteins psbY, chloroplast precursor (L-arginine
           metabolising enzyme) (L-AME) [Contains: Photosystem II
           protein psbY-1 (psbY-A1); Photosystem II protein psbY-2
           (psbY-A2)] [Arabidopsis thaliana]
          Length = 189

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +1

Query: 262 RPRATIPTPVKPSPNIIASTAQMEGDTVQKLSYLPNPVCVTQ 387
           +P  ++PTP KP+ ++  ++  + G     LSY    + + Q
Sbjct: 28  KPFISLPTPPKPNVSLAVTSTALAGAVFSSLSYSEPALAIQQ 69


>At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to pEARLI
           1 (Accession No. L43080): an Arabidopsis member of a
           conserved gene family (PGF95-099), Plant Physiol. 109
           (4), 1497 (1995); contains Pfam protease inhibitor/seed
           storage/LTP family domain PF00234
          Length = 182

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = +1

Query: 148 LDAKSDCRRQPI-LPTACSNPVSASKRFETQTI---YKNSIYRPRATIPTPVKPSPNI 309
           L A ++CR  P   P    NP   S +  T ++   Y  +   P  ++PTP  PSP++
Sbjct: 22  LTAGTNCRCNPSPKPRPLPNPKVPSPKVPTPSVPSPYVPTPSVPSPSVPTPSVPSPSV 79


>At4g18910.1 68417.m02788 aquaglyceroporin / NOD26-like major
           intrinsic protein 2 (NLM2) contains Pfam profile: MIP
           PF00230; similar to SP:P08995 {Glycine max} Nodulin-26
           (N-26); identical to cDNA aquaglyceroporin (nlm2 gene)
           GI:11071655, aquaglyceroporin [Arabidopsis thaliana]
           GI:11071656
          Length = 294

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 451 LRGDVLHGTLTPHVVVAGPXSTASRTPG-SVGTTTFAPC 338
           L G  +  T+  +V++AGP S AS  PG S+G      C
Sbjct: 205 LAGLAVGSTVLLNVIIAGPVSGASMNPGRSLGPAMVYSC 243


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,127,016
Number of Sequences: 28952
Number of extensions: 384805
Number of successful extensions: 1133
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)