Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0463
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.09c |||High-mobility group non-histone chromatin prote...    43   3e-05
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc...    40   3e-04
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc...    40   3e-04
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun...    26   4.1  
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch...    25   9.4  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    25   9.4  

>SPAC57A10.09c |||High-mobility group non-histone chromatin
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
 Frame = +3

Query: 90  DVNAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDL--KDKSEWEEKPTK 263
           D N PKR  +AFM +  ENR+K+  +NP     ++    G+ W++L   ++  +EEK  +
Sbjct: 12  DPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREPYEEKARQ 71

Query: 264 RKK 272
            K+
Sbjct: 72  DKE 74


>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +3

Query: 108 RPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRD 224
           RP  AF+L+  E    +++ NP I  ++V+K  GE+WR+
Sbjct: 105 RPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +3

Query: 108 RPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRD 224
           RP  AF+L+  E    +++ NP I  ++V+K  GE+WR+
Sbjct: 105 RPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
           Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 251

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = +3

Query: 147 RKKIIEENPGIKVTEVAKRAGELWRDLK----DKSEWEEKPTKRKK 272
           ++ I++E     V E+  +  E  ++LK    +K + EEKP K+K+
Sbjct: 197 KEHILQETGDATVEELQNKGKEKQKELKKGKREKKDEEEKPKKKKQ 242


>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
           Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +2

Query: 128 AVAQRKQKENH*REPRDQGHRGRQARGRTLEGPERQIGMGR 250
           A  Q +Q+EN     R +G RGR   G T   P R+ G GR
Sbjct: 80  AKQQAQQRENRGSRFRGRGQRGRGNYGHT--APNRR-GRGR 117


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 105 KRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRD 224
           KRP  +FML+  + + +I    P      +++  G+LWR+
Sbjct: 17  KRPLNSFMLYRRDRQAEI----PTSNHQSISRIIGQLWRN 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,493,697
Number of Sequences: 5004
Number of extensions: 23090
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)