Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0463
(648 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical... 66 3e-11
AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility... 66 3e-11
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 54 1e-07
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 51 8e-07
Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical pr... 48 8e-06
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 48 8e-06
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 47 1e-05
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 43 2e-04
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 43 2e-04
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 43 2e-04
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 43 2e-04
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 43 2e-04
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 39 0.003
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 39 0.003
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 39 0.003
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 39 0.003
AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior pha... 38 0.005
U37532-1|AAC05308.1| 438|Caenorhabditis elegans HMG-box protein... 37 0.014
AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical... 35 0.057
Z81097-14|CAB03171.2| 221|Caenorhabditis elegans Hypothetical p... 33 0.17
Z99281-12|CAB16521.1| 649|Caenorhabditis elegans Hypothetical p... 31 0.53
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 31 0.53
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 31 0.53
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 31 0.53
AF016683-7|AAM97999.1| 609|Caenorhabditis elegans Hypothetical ... 31 0.53
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr... 31 0.93
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p... 31 0.93
Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical pr... 31 0.93
Z67884-4|CAH60753.1| 905|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z67884-3|CAA91809.2| 921|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical pr... 29 3.8
U61952-4|AAK84529.1| 267|Caenorhabditis elegans Hypothetical pr... 28 5.0
AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical... 28 5.0
U46753-2|AAA85760.1| 894|Caenorhabditis elegans Hypothetical pr... 27 8.7
AL033536-8|CAA22136.2| 178|Caenorhabditis elegans Hypothetical ... 27 8.7
AF083232-1|AAD03690.1| 392|Caenorhabditis elegans nuclear recep... 27 8.7
AF016438-10|AAK84533.2| 394|Caenorhabditis elegans Nuclear horm... 27 8.7
>AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical
protein Y48B6A.14 protein.
Length = 95
Score = 65.7 bits (153), Expect = 3e-11
Identities = 31/61 (50%), Positives = 39/61 (63%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLKDKSEWEEKPTKRK 269
D NAPKR +AF W+ ENR++I + PG+ V +VAK AG W L DKS WE+K K
Sbjct: 24 DPNAPKRAMSAFFFWMQENRERI--KKPGMGVADVAKAAGVEWGKLTDKSRWEKKAADDK 81
Query: 270 K 272
K
Sbjct: 82 K 82
>AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility
group protein 1.1 protein.
Length = 95
Score = 65.7 bits (153), Expect = 3e-11
Identities = 31/61 (50%), Positives = 39/61 (63%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLKDKSEWEEKPTKRK 269
D NAPKR +AF W+ ENR++I + PG+ V +VAK AG W L DKS WE+K K
Sbjct: 24 DPNAPKRAMSAFFFWMQENRERI--KKPGMGVADVAKAAGVEWGKLTDKSRWEKKAADDK 81
Query: 270 K 272
K
Sbjct: 82 K 82
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLK--DKSEWEEKPTK 263
D N PKR TA+++W N NR + E+ G + +VAK+AG W+ + DK EW +K +
Sbjct: 557 DPNEPKRATTAYIIWFNANRNSMKED--GDTLGDVAKKAGAKWKSMSADDKKEWNDKAAQ 614
Query: 264 RK 269
K
Sbjct: 615 DK 616
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 50.8 bits (116), Expect = 8e-07
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLK--DKSEWEEKPTK 263
D NAPKR +A+M W +R ++ E+ G V +VAK+ G W+ + DK +WEEK +
Sbjct: 552 DPNAPKRATSAYMQWFLASRNELKED--GDSVADVAKKGGAKWKTMSSDDKKKWEEKAEE 609
Query: 264 RK 269
K
Sbjct: 610 DK 611
>Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical
protein F40E10.2 protein.
Length = 212
Score = 47.6 bits (108), Expect = 8e-06
Identities = 21/51 (41%), Positives = 33/51 (64%)
Frame = +3
Query: 105 KRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLKDKSEWEEKP 257
KRP AFM+W R+K+ ++NP + +E++KR G W+ L SE E++P
Sbjct: 49 KRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKQL---SEQEKRP 96
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 47.6 bits (108), Expect = 8e-06
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = +3
Query: 96 NAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLKDKSE 242
N KRP AFM+W R+KI E P + E++K+ G WR L D+ +
Sbjct: 91 NHIKRPMNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSLTDEEK 139
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/51 (45%), Positives = 32/51 (62%)
Frame = +3
Query: 105 KRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLKDKSEWEEKP 257
KRP AFM+W RKK+ ENP + +E++KR G W+ L SE E++P
Sbjct: 61 KRPMNAFMVWSRGQRKKMALENPKMHNSEISKRLGTEWKML---SEQEKRP 108
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +3
Query: 96 NAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDL--KDKSEWEEKPTKRK 269
N KRP AFM+W + R+KI++ P + + ++K G W+ + +K + E+ ++
Sbjct: 176 NHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLS 235
Query: 270 KNTMPQ 287
K M Q
Sbjct: 236 KLHMEQ 241
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +3
Query: 96 NAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDL--KDKSEWEEKPTKRK 269
N KRP AFM+W + R+KI++ P + + ++K G W+ + +K + E+ ++
Sbjct: 173 NHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLS 232
Query: 270 KNTMPQ 287
K M Q
Sbjct: 233 KLHMEQ 238
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +3
Query: 96 NAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDL--KDKSEWEEKPTKRK 269
N KRP AFM+W + R+KI++ P + + ++K G W+ + +K + E+ ++
Sbjct: 279 NHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLS 338
Query: 270 KNTMPQ 287
K M Q
Sbjct: 339 KLHMEQ 344
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +3
Query: 96 NAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDL--KDKSEWEEKPTKRK 269
N KRP AFM+W + R+KI++ P + + ++K G W+ + +K + E+ ++
Sbjct: 327 NHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLS 386
Query: 270 KNTMPQ 287
K M Q
Sbjct: 387 KLHMEQ 392
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +3
Query: 96 NAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDL--KDKSEWEEKPTKRK 269
N KRP AFM+W + R+KI++ P + + ++K G W+ + +K + E+ ++
Sbjct: 327 NHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLS 386
Query: 270 KNTMPQ 287
K M Q
Sbjct: 387 KLHMEQ 392
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWR--DLKDKSEWEEKPTK 263
D +APKR +AF + + R +I +P KV +VA+ G++W+ + K +E+K
Sbjct: 130 DPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQA 189
Query: 264 RKKNTMPQ*RSIK 302
K + R+ K
Sbjct: 190 DKDRYADEMRNYK 202
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 141 ENRKKIIEENPGIKVTEVAKRAGELWRDLKD 233
E++KK EN ++VTE++K+ E W+ + D
Sbjct: 61 EHKKKYPNEN--VQVTEISKKCSEKWKTMVD 89
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWR--DLKDKSEWEEKPTK 263
D +APKR +AF + + R +I +P KV +VA+ G++W+ + K +E+K
Sbjct: 129 DPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQA 188
Query: 264 RKKNTMPQ*RSIK 302
K + R+ K
Sbjct: 189 DKDRYADEMRNYK 201
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 141 ENRKKIIEENPGIKVTEVAKRAGELWRDLKD 233
E++KK EN ++VTE++K+ E W+ + D
Sbjct: 62 EHKKKYPNEN--VQVTEISKKCSEKWKTMVD 90
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWR--DLKDKSEWEEKPTK 263
D +APKR +AF + + R +I +P KV +VA+ G++W+ + K +E+K
Sbjct: 131 DPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQA 190
Query: 264 RKKNTMPQ*RSIK 302
K + R+ K
Sbjct: 191 DKDRYADEMRNYK 203
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 141 ENRKKIIEENPGIKVTEVAKRAGELWRDLKD 233
E++KK EN ++VTE++K+ E W+ + D
Sbjct: 62 EHKKKYPNEN--VQVTEISKKCSEKWKTMVD 90
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWR--DLKDKSEWEEKPTK 263
D +APKR +AF + + R +I +P KV +VA+ G++W+ + K +E+K
Sbjct: 131 DPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQA 190
Query: 264 RKKNTMPQ*RSIK 302
K + R+ K
Sbjct: 191 DKDRYADEMRNYK 203
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 141 ENRKKIIEENPGIKVTEVAKRAGELWRDLKD 233
E++KK EN ++VTE++K+ E W+ + D
Sbjct: 62 EHKKKYPNEN--VQVTEISKKCSEKWKTMVD 90
>AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior
pharynx defect protein 1 protein.
Length = 437
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Frame = +3
Query: 105 KRPATAFMLWLNENRKKIIEE--NPGIKVTEVAKRAGELWRDL--KDKSEWEEKPTKRKK 272
K+P AFM ++ ENRK ++EE N + E+ K G+ W DL ++++++ E K K+
Sbjct: 192 KKPLNAFMWFMKENRKALLEEIGNNEKQSAELNKELGKRWHDLSKEEQAKYFEMAKKDKE 251
>U37532-1|AAC05308.1| 438|Caenorhabditis elegans HMG-box protein
protein.
Length = 438
Score = 36.7 bits (81), Expect = 0.014
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Frame = +3
Query: 105 KRPATAFMLWLNENRKKIIEE--NPGIKVTEVAKRAGELWRDL--KDKSEWEEKPTKRKK 272
K+P AF+ ++ ENRK ++EE N + E+ K G+ W DL ++++++ E K K+
Sbjct: 193 KKPLNAFVWFMKENRKALLEEIGNNEKQSAELNKELGKRWHDLSKEEQAKYFEMAKKDKE 252
>AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical
protein Y71H2AM.17 protein.
Length = 338
Score = 34.7 bits (76), Expect = 0.057
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +3
Query: 102 PKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLKD--KSEWEEK 254
P+RP +M + + K+ ENP ++ ++ K G+ W DL D KS ++ +
Sbjct: 26 PERPLQPYMRYSRKMWPKVRAENPEAQLWDIGKMIGKYWLDLPDGEKSHYQHE 78
>Z81097-14|CAB03171.2| 221|Caenorhabditis elegans Hypothetical
protein K07A1.10 protein.
Length = 221
Score = 33.1 bits (72), Expect = 0.17
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 227 ERQIGMGRETNKAKEEYNAAMKKYKDSGAXRRVQTEK 337
E IG+ RE N AK+EY KK ++S R + EK
Sbjct: 99 EEAIGLFREFNNAKKEYKELQKKKRESELARIAELEK 135
>Z99281-12|CAB16521.1| 649|Caenorhabditis elegans Hypothetical
protein Y57G11C.20 protein.
Length = 649
Score = 31.5 bits (68), Expect = 0.53
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +2
Query: 101 AKAAGDRLHAVAQRKQKENH*REPRDQGHRGRQARGRTLE-GPERQIGMGRETNKAKEEY 277
AKA D +A+ K+++N RE H+ + + ++ + Q +T+K E+
Sbjct: 135 AKAKKDEEERIAREKEEKNKQREKHLATHKKAEEFAKKVQTDKDEQREKHLDTHKKAEQN 194
Query: 278 NAAMKKYKDSGAXRRVQTEKE 340
+KY D + ++T+K+
Sbjct: 195 AQDNQKYHDEERKKHIETQKK 215
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +3
Query: 117 TAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLKDKSE 242
+ ++L+ E RK+I+ ENP EV+K G W+ L ++ +
Sbjct: 1454 SGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQK 1495
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +3
Query: 117 TAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLKDKSE 242
+ ++L+ E RK+I+ ENP EV+K G W+ L ++ +
Sbjct: 1454 SGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQK 1495
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +3
Query: 117 TAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLKDKSE 242
+ ++L+ E RK+I+ ENP EV+K G W+ L ++ +
Sbjct: 84 SGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQK 125
>AF016683-7|AAM97999.1| 609|Caenorhabditis elegans Hypothetical
protein K09F6.9 protein.
Length = 609
Score = 31.5 bits (68), Expect = 0.53
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +2
Query: 101 AKAAGDRLHAVAQRKQKENH*REPRDQGHRGRQARGRTLE-GPERQIGMGRETNKAKEEY 277
AKA D +A+ K+++N RE H+ + R + + Q +T+K E+
Sbjct: 136 AKAKKDEEERIAREKEEKNKQREKHLATHKKAEEFARKVRTDKDEQREKHLDTHKKAEQN 195
Query: 278 NAAMKKYKDSGAXRRVQTEKE 340
+KY D + ++T+K+
Sbjct: 196 AQDDQKYHDEARKKYIETQKK 216
>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical protein
T22H6.6a protein.
Length = 1405
Score = 30.7 bits (66), Expect = 0.93
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +3
Query: 105 KRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDL--KDKSEWEEKPTKRKK 272
+RP AFM++ +R + ++ P V+K GE W L K+E+ + T+ K+
Sbjct: 844 RRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSLAADQKAEYHKLATQVKE 901
>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 30.7 bits (66), Expect = 0.93
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +3
Query: 105 KRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDL--KDKSEWEEKPTKRKK 272
+RP AFM++ +R + ++ P V+K GE W L K+E+ + T+ K+
Sbjct: 844 RRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSLAADQKAEYHKLATQVKE 901
>Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical
protein T22H6.6b protein.
Length = 640
Score = 30.7 bits (66), Expect = 0.93
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +3
Query: 105 KRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDL--KDKSEWEEKPTKRKK 272
+RP AFM++ +R + ++ P V+K GE W L K+E+ + T+ K+
Sbjct: 79 RRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSLAADQKAEYHKLATQVKE 136
>Z67884-4|CAH60753.1| 905|Caenorhabditis elegans Hypothetical
protein T14G8.3b protein.
Length = 905
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 11/68 (16%)
Frame = +3
Query: 132 WLNENR----KKIIEENPGIKVTEVAKRAGELWRD-------LKDKSEWEEKPTKRKKNT 278
W NE + K+ E+P +K +E+A++A +L R+ LK S + K +++KK T
Sbjct: 786 WWNEKKDLFEKQAKNEDPVVKASEIAEKARDLEREVRYLVNKLKIASSKKSKESEKKKKT 845
Query: 279 MPQ*RSIK 302
+ ++K
Sbjct: 846 KKEKDTVK 853
>Z67884-3|CAA91809.2| 921|Caenorhabditis elegans Hypothetical protein
T14G8.3a protein.
Length = 921
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 11/68 (16%)
Frame = +3
Query: 132 WLNENR----KKIIEENPGIKVTEVAKRAGELWRD-------LKDKSEWEEKPTKRKKNT 278
W NE + K+ E+P +K +E+A++A +L R+ LK S + K +++KK T
Sbjct: 802 WWNEKKDLFEKQAKNEDPVVKASEIAEKARDLEREVRYLVNKLKIASSKKSKESEKKKKT 861
Query: 279 MPQ*RSIK 302
+ ++K
Sbjct: 862 KKEKDTVK 869
>Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical
protein C11G6.3 protein.
Length = 385
Score = 28.7 bits (61), Expect = 3.8
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +2
Query: 125 HAVAQRKQKENH*REPRDQGHRGRQARGRTLEGPERQIGMGRETNKAKEEYNAAMKKYKD 304
H +RK KE H + +D+ HR R+ E ER+ K KE +AA ++ ++
Sbjct: 120 HHKKERKDKE-HKKHKKDREHRDREKERERDERKERE-----RQQKEKEREDAARREIEE 173
Query: 305 SGA--XRRVQTEKE 340
+RV E+E
Sbjct: 174 KAEMDAKRVAEEEE 187
>U61952-4|AAK84529.1| 267|Caenorhabditis elegans Hypothetical
protein F42A9.7 protein.
Length = 267
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = +1
Query: 76 RNARRT*TRQSGRRPPSCCGSTKTERKSLKRTPGSRSQRSPSARENSGGT*KTNRNGKRN 255
++ R T +R+S RR G + RKS + SRS +S + ++S T T ++
Sbjct: 33 KSQRSTKSRKSSRRSRRRNGRS---RKSSRSGKSSRSSKSGRSSKSSNSTKTTGSKSSKS 89
Query: 256 QQSER 270
+S+R
Sbjct: 90 SRSQR 94
>AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical
protein Y116A8C.36 protein.
Length = 1097
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +2
Query: 119 RLHAVAQRKQKENH*REPRDQGHRGRQARGRTLEGPERQ--IGMGRETNKAKEEYNAAMK 292
R A ++K++E ++ R++ + RQA ERQ I RE + K +
Sbjct: 319 RRRAEVEKKEREEEAKKNRERQEKERQAEVERQAELERQRIIEAQREEEEKKRRLEMERR 378
Query: 293 KYKDSGAXRRVQTEK 337
+ +D R+VQ EK
Sbjct: 379 REEDE-KMRKVQMEK 392
>U46753-2|AAA85760.1| 894|Caenorhabditis elegans Hypothetical
protein C34F11.5 protein.
Length = 894
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 142 KTERKSLKRTPGSRSQRSPSARENSGGT*KTNRNGKRNQQSERR 273
KT++KS + G + + A + S K+NR G NQ+ +R
Sbjct: 846 KTKKKSKDKKEGRKEESKEKAHKKSKPK-KSNRRGHMNQKKAKR 888
>AL033536-8|CAA22136.2| 178|Caenorhabditis elegans Hypothetical
protein Y53C10A.2 protein.
Length = 178
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 99 APKRPATAFMLWLNENRKKIIEENPGIKVTEVAK 200
A P T +W NE R + +EEN K+ + K
Sbjct: 51 AAPAPVTVLKMWPNEMRSQSLEENLDAKLEQFKK 84
>AF083232-1|AAD03690.1| 392|Caenorhabditis elegans nuclear receptor
NHR-18 protein.
Length = 392
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Frame = -2
Query: 323 LVGPRRCLYTSSLRHCILLSLC--WFLFPFRFVFQVP---PEFSRALGDLCDLDPGVLFN 159
+VG C+ ++ I LS C + L ++ FQ P F +++ D+ DL+P +
Sbjct: 240 MVGNGACMNMNNFE--IDLSWCTNYSLEQLKYFFQTPNGKKNFQQSIQDMIDLNPSSIEV 297
Query: 158 DFLSVFVEPQHEGGR 114
++ + + +H G R
Sbjct: 298 SYMLLHLSLEHAGKR 312
>AF016438-10|AAK84533.2| 394|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 18 protein.
Length = 394
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Frame = -2
Query: 323 LVGPRRCLYTSSLRHCILLSLC--WFLFPFRFVFQVP---PEFSRALGDLCDLDPGVLFN 159
+VG C+ ++ I LS C + L ++ FQ P F +++ D+ DL+P +
Sbjct: 242 MVGNGACMNMNNFE--IDLSWCTNYSLEQLKYFFQTPNGKKNFQQSIQDMIDLNPSSIEV 299
Query: 158 DFLSVFVEPQHEGGR 114
++ + + +H G R
Sbjct: 300 SYMLLHLSLEHAGKR 314
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,486,802
Number of Sequences: 27780
Number of extensions: 136343
Number of successful extensions: 738
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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