Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0463
(648 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g23800.1 68417.m03422 high mobility group (HMG1/2) family pro... 51 6e-07
At1g20693.1 68414.m02592 high mobility group protein beta1 (HMGb... 50 1e-06
At3g51880.2 68416.m05690 high mobility group protein alpha (HMGa... 50 2e-06
At3g51880.1 68416.m05689 high mobility group protein alpha (HMGa... 50 2e-06
At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro... 48 5e-06
At1g20696.1 68414.m02593 high mobility group protein beta2 (HMGb... 47 1e-05
At3g28730.1 68416.m03587 structure-specific recognition protein ... 46 2e-05
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 44 1e-04
At2g17560.1 68415.m02032 high mobility group protein gamma (HMGg... 44 1e-04
At5g23420.1 68418.m02747 high mobility group (HMG1/2) family pro... 43 2e-04
At4g35570.1 68417.m05054 high mobility group protein delta (HMGd... 36 0.018
At2g37630.1 68415.m04616 myb family transcription factor (MYB91)... 31 0.87
At1g23660.1 68414.m02984 expressed protein contains Pfam profile... 30 1.2
At5g55660.1 68418.m06940 expressed protein similar to unknown pr... 29 3.5
At4g12780.1 68417.m02005 auxilin-related low similarity to SP|Q2... 29 3.5
At1g23580.1 68414.m02968 expressed protein contains Pfam profile... 28 4.7
At5g59320.1 68418.m07433 lipid transfer protein 3 (LTP3) identic... 28 6.1
At1g23520.1 68414.m02956 expressed protein contains Pfam profile... 28 6.1
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 27 8.1
>At4g23800.1 68417.m03422 high mobility group (HMG1/2) family
protein similar to HMG2B [Homo sapiens] GI:32335;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 456
Score = 51.2 bits (117), Expect = 6e-07
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +3
Query: 102 PKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLKDKSEWE-EKPTKRKKNT 278
PK P +AF+++ NE R + EEN V EVAK GE W++L DK + EK K+ K T
Sbjct: 255 PKHPVSAFLVYANERRAALREENK--SVVEVAKITGEEWKNLSDKKKAPYEKVAKKNKET 312
Query: 279 MPQ 287
Q
Sbjct: 313 YLQ 315
Score = 42.7 bits (96), Expect = 2e-04
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLKDKSE 242
D N PK+PA+++ L+ + RKK+ EE PG V W++L ++ +
Sbjct: 375 DPNKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEEEK 425
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDL--KDKSEWEEK 254
D KRP+++++LW + ++ +ENP E + G W+ L +DK +EE+
Sbjct: 134 DCPETKRPSSSYVLWCKDQWTEVKKENPEADFKETSNILGAKWKSLSAEDKKPYEER 190
>At1g20693.1 68414.m02592 high mobility group protein beta1
(HMGbeta1) / HMG protein beta1 nearly identical to HMG
protein (HMGbeta1) [Arabidopsis thaliana] GI:2832359
Length = 144
Score = 50.4 bits (115), Expect = 1e-06
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIK-VTEVAKRAGELWRDLKD--KSEWEEKPT 260
D N PKRPA+AF +++ + R+ +ENP K V V K AG+ W+ L D K+ + K
Sbjct: 34 DPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAE 93
Query: 261 KRK----KNTMPQ*RSIKTAARXDE 323
KRK KN + ++ + DE
Sbjct: 94 KRKVEYEKNIKAYNKKLEEGPKEDE 118
>At3g51880.2 68416.m05690 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 185
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIK-VTEVAKRAGELWRDLK--DKSEWEEKPT 260
D N PKR +AF ++L + R +ENP +K V+ V K G+ W+ + +K+ +EEK
Sbjct: 49 DPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAA 108
Query: 261 KRK 269
KRK
Sbjct: 109 KRK 111
>At3g51880.1 68416.m05689 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 178
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIK-VTEVAKRAGELWRDLK--DKSEWEEKPT 260
D N PKR +AF ++L + R +ENP +K V+ V K G+ W+ + +K+ +EEK
Sbjct: 49 DPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAA 108
Query: 261 KRK 269
KRK
Sbjct: 109 KRK 111
>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
protein similar to HMG protein [Arabidopsis thaliana]
GI:2832361; contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 151
Score = 48.0 bits (109), Expect = 5e-06
Identities = 22/60 (36%), Positives = 41/60 (68%), Gaps = 3/60 (5%)
Frame = +3
Query: 102 PKRPATAFMLWLNENRKKIIEENPGIK-VTEVAKRAGELWRDL--KDKSEWEEKPTKRKK 272
PK+PATAF +L++ RK+ EENP +K + E+ K GE W+ + ++K ++ + T++++
Sbjct: 63 PKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKYYDIATEKRE 122
>At1g20696.1 68414.m02593 high mobility group protein beta2
(HMGbeta2) / HMG protein beta2 nearly identical to HMG
protein (HMGbeta2) [Arabidopsis thaliana] GI:2832361
Length = 141
Score = 46.8 bits (106), Expect = 1e-05
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIK-VTEVAKRAGELWRDLKD--KSEWEEKPT 260
D N PKRP++AF +++ + R EE+P K V V K GE W+ L D K+ + K
Sbjct: 31 DPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKAD 90
Query: 261 KRK----KNTMPQ*RSIKTAARXDE 323
KRK KN + ++ + DE
Sbjct: 91 KRKVEYEKNMKAYNKKLEEGPKEDE 115
>At3g28730.1 68416.m03587 structure-specific recognition protein 1 /
high mobility group protein / HMG protein nearly
identical to SP|Q05153 Structure-specific recognition
protein 1 homolog (HMG protein) {Arabidopsis thaliana};
contains Pfam profile PF00505: HMG (high mobility group)
box; contains Pfam profile PF03531: Structure-specific
recognition protein
Length = 646
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLK--DKSEWEEK 254
D NAPKR + FM + R I +E+PGI EV K G+ WR + DK +E K
Sbjct: 558 DPNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQMSADDKEPYEAK 614
>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
protein similar to SP|P40618 High mobility group protein
HMG2A {Gallus gallus}; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 446
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Frame = +3
Query: 102 PKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLKD--KSEWEEKPTKRKK 272
PK+P +A++++ NE R + EN V EVAK AGE W++L + K+ +++ K K+
Sbjct: 246 PKQPISAYLIYANERRAALKGENKS--VIEVAKMAGEEWKNLSEEKKAPYDQMAKKNKE 302
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLKDKSE 242
D N PK+P +++ L+ + RK ++EE+PGI + V W +L ++ +
Sbjct: 368 DPNKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTAHISLKWMELGEEEK 418
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDL--KDKSEWEEK 254
D KRP+T ++LW +N ++ ++NP E + G W+ + ++K +EEK
Sbjct: 125 DCAETKRPSTPYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGISAEEKKPYEEK 181
>At2g17560.1 68415.m02032 high mobility group protein gamma
(HMGgamma) / HMG protein gamma nearly identical to HMG
protein (HMGgamma) [Arabidopsis thaliana] GI:2832355
Length = 138
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIK-VTEVAKRAGELWRDL--KDKSEWEEKPT 260
D N PKRP +AF ++L + RK+ NP K V V K AG W+ + +DK+ + K
Sbjct: 31 DPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAE 90
Query: 261 KRK 269
RK
Sbjct: 91 SRK 93
>At5g23420.1 68418.m02747 high mobility group (HMG1/2) family
protein similar to high mobility group protein 2 HMG2
[Ipomoea nil] GI:1052956; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 241
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +3
Query: 96 NAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLKDKSE 242
N PKRP TAF +++++ RK E+ G + AK GE W+ L ++ +
Sbjct: 113 NKPKRPLTAFFIFMSDFRKTFKSEHNGSLAKDAAKIGGEKWKSLTEEEK 161
>At4g35570.1 68417.m05054 high mobility group protein delta
(HMGdelta) / HMG protein delta identical to HMG protein
(HMGdelta) [Arabidopsis thaliana] GI:2832363
Length = 125
Score = 36.3 bits (80), Expect = 0.018
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIK-VTEVAKRAGELWRDLKDK 236
D N PK+P + F ++L++ RK+ NP K V V + AG+ W+ + ++
Sbjct: 30 DPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEE 79
>At2g37630.1 68415.m04616 myb family transcription factor (MYB91)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 367
Score = 30.7 bits (66), Expect = 0.87
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 150 KKIIEENPGIKVTEVAKRAGELWRDLKDKSEWEEKPTKRK 269
KKI E PG AKR G+ W K+K + EEK + ++
Sbjct: 82 KKIAAEVPG----RTAKRLGKWWEVFKEKQQREEKESNKR 117
>At1g23660.1 68414.m02984 expressed protein contains Pfam profile
PF02713: Domain of unknown function DUF220; expression
supported by MPSS
Length = 264
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 198 KRAGELWRDLKDKSEWEEKPTKRKKNT 278
+R GE+WR ++K W + P K K T
Sbjct: 45 RREGEIWRAAEEKHPWYDAPAKVKVTT 71
>At5g55660.1 68418.m06940 expressed protein similar to unknown
protein (pir||T08929)
Length = 778
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +2
Query: 167 EPRDQGHRGRQARGRTLEGPE-RQIGMGRETNKAKEEYNAAMKKYKDSGAXRRVQTEKET 343
EP G Q + G E ++ G+E ++K+E + ++K + ++ + E ET
Sbjct: 11 EPTANGTSSLQKTSDAISGKEVQENASGKEVQESKKEEDTGLEKMEIDDEGKQHEGESET 70
Query: 344 G*KRTK 361
G K +
Sbjct: 71 GDKEVE 76
>At4g12780.1 68417.m02005 auxilin-related low similarity to
SP|Q27974 Auxilin {Bos taurus}
Length = 485
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/79 (25%), Positives = 35/79 (44%)
Frame = +2
Query: 104 KAAGDRLHAVAQRKQKENH*REPRDQGHRGRQARGRTLEGPERQIGMGRETNKAKEEYNA 283
KA HA +R++KEN +G R E E+Q+ + RE + + E
Sbjct: 47 KAEAKFRHA-KERREKENLKASRSREGDHTENYDSRERELREKQVRLDRERAEREAEMEK 105
Query: 284 AMKKYKDSGAXRRVQTEKE 340
A ++ K+ + + E+E
Sbjct: 106 AQEREKEEREREQKRIERE 124
>At1g23580.1 68414.m02968 expressed protein contains Pfam profile
PF02713: Domain of unknown function DUF220
Length = 285
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Frame = +3
Query: 120 AFMLWLNENRKKIIEENPGIKVTEVAKRAGEL------WRDLKDKSEWEEK 254
AF W+N+N ++ +EE+P +K A E+ + D+ EWE +
Sbjct: 6 AFGAWINQNSQQPLEEDPKSSEHVESKSASEMDNGPAKMKKYYDEDEWERQ 56
>At5g59320.1 68418.m07433 lipid transfer protein 3 (LTP3) identical
to lipid transfer protein 3 from Arabidopsis thaliana
[gi:8571921]; contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 115
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 103 QSGRRPPSCCGSTKTERKSLKRTP 174
+ G PPSCC KT K TP
Sbjct: 43 KGGLVPPSCCAGVKTLNSMAKTTP 66
>At1g23520.1 68414.m02956 expressed protein contains Pfam profile
PF02713: Domain of unknown function DUF220; expression
supported by MPSS
Length = 263
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 210 ELWRDLKDKSEWEEKPTKRKKNT 278
+LWR + K +WE+ P K K T
Sbjct: 48 KLWRHAEKKEQWEDVPAKVKVET 70
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 58 SVKRSLRNARRT*TRQSGRRPPSCCGSTKTERKSLKRTPGSRSQRSPSAR 207
S +RS A R+ R PP S+++ R + R P S ++R+ +R
Sbjct: 486 SDQRSRHGAGRSGRSSFARLPPRSLASSRSARGAGSRAPSSSAKRASGSR 535
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,112,118
Number of Sequences: 28952
Number of extensions: 129417
Number of successful extensions: 682
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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