Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0462
         (537 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   4.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.0  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -3

Query: 262 AHRVLXWVWRLTDHLTTA 209
           +HR   W W  T H  +A
Sbjct: 24  SHRPAWWFWTATSHEASA 41


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 66  T*NNQAFKSQDALPPVS 116
           T + Q  KSQ +LPPVS
Sbjct: 286 TLSTQHAKSQASLPPVS 302


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 2   PYRQ*KSSGTSSIPKFHSSLQDLKQP 79
           P +  +SS  SSIPK + S   + QP
Sbjct: 355 PPKSSESSTGSSIPKLNLSTALMSQP 380


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,754
Number of Sequences: 438
Number of extensions: 2605
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)