Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0462
         (537 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10350.1 68417.m01700 no apical meristem (NAM) family protein...    33   0.091
At2g32140.1 68415.m03928 disease resistance protein (TIR class),...    30   0.85 
At5g26130.1 68418.m03108 pathogenesis-related protein, putative ...    30   1.1  
At1g31370.1 68414.m03839 expressed protein ; expression supporte...    29   1.5  
At5g08010.1 68418.m00932 expressed protein condensin subunit SMC...    28   4.5  
At4g16390.1 68417.m02481 chloroplastic RNA-binding protein P67, ...    28   4.5  
At4g03430.1 68417.m00470 pre-mRNA splicing factor-related simila...    28   4.5  
At4g15093.1 68417.m02319 catalytic LigB subunit of aromatic ring...    27   7.9  
At3g62110.1 68416.m06978 glycoside hydrolase family 28 protein /...    27   7.9  
At2g18730.1 68415.m02181 diacylglycerol kinase, putative contain...    27   7.9  
At1g60770.1 68414.m06841 pentatricopeptide (PPR) repeat-containi...    27   7.9  

>At4g10350.1 68417.m01700 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           nap gene, Arabidopsis thaliana, gb:AJ222713
          Length = 341

 Score = 33.5 bits (73), Expect = 0.091
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 301 GASLGNGDSVTSNAHRVLXWVWRLTDHLTTASNGSDSSSRGTEY 170
           G  +G  ++V S+ H+     W + D L T   G++ SSRG  Y
Sbjct: 265 GLDVGTCETVASHNHQQGLGEWAMMDRLVTCHMGNEDSSRGITY 308


>At2g32140.1 68415.m03928 disease resistance protein (TIR class),
           putative domain signature TIR exists, suggestive of a
           disease resistance protein.
          Length = 371

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 40/143 (27%), Positives = 57/143 (39%), Gaps = 4/143 (2%)
 Frame = -3

Query: 511 VSGSRFLISVYLTRKTK-NTVRTASYNIKRPVADI-SQHPNHDSEQPP--ELLKTAVPRR 344
           VS  +    +Y T +   +T+R  S N    V    SQ PN D E      LLK  V   
Sbjct: 224 VSERKLTTDMYDTPEVSTSTMRKVSSNNGVGVGTFKSQKPNFDDEDDDGDSLLKALV--- 280

Query: 343 GAKLNARSTSILVRGASLGNGDSVTSNAHRVLXWVWRLTDHLTTASNGSDSSSRGTEYST 164
            AKL A +TSI+   A L    S    A   +    +    L  +SNG    S     S+
Sbjct: 281 -AKLVASTTSIVAAYAELQRAHSDAIQAAETVVVDVKTLSELIRSSNGGGGGSGSGSGSS 339

Query: 163 XCRTARRAYSKARMACDTGGKAS 95
                RR+  + ++  +  G +S
Sbjct: 340 LENQPRRSKVRKQVWAEVLGISS 362


>At5g26130.1 68418.m03108 pathogenesis-related protein, putative
           similar to PR-1a protein [Nicotiana tabacum] GI:19944;
           contains Pfam profile PF00188: SCP-like extracellular
           protein
          Length = 164

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 23/85 (27%), Positives = 34/85 (40%)
 Frame = -3

Query: 358 AVPRRGAKLNARSTSILVRGASLGNGDSVTSNAHRVLXWVWRLTDHLTTASNGSDSSSRG 179
           A  R+G      S S  + G +L       S A  V  WV   +D++  ++  SD    G
Sbjct: 62  AQQRKGDCSLTHSNSNGLYGENLAWSGGALSGAEAVKLWVNEKSDYIYASNTCSDGKQCG 121

Query: 178 TEYSTXCRTARRAYSKARMACDTGG 104
                  RT+      A++ CD GG
Sbjct: 122 HYTQVVWRTSEWV-GCAKVKCDNGG 145


>At1g31370.1 68414.m03839 expressed protein ; expression supported
           by MPSS
          Length = 193

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -1

Query: 462 KTPFEQRVTILSGQSPTFPNIRTTTANSLQSS*RPRCH 349
           K+ FE+   I S   P  P++RTT+ NSL S     CH
Sbjct: 126 KSLFEKHPDIASKFRPKNPHLRTTSLNSLLSLTEILCH 163


>At5g08010.1 68418.m00932 expressed protein condensin subunit SMC4,
           Drosophila melanogaster, EMBL:AF186472
          Length = 566

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 35  SIPKFHSSLQDLKQPSLQEPRCLATRV 115
           ++ K  SS +DL    L+ PRCLA+ V
Sbjct: 21  NVSKGKSSSEDLTNVKLESPRCLASNV 47


>At4g16390.1 68417.m02481 chloroplastic RNA-binding protein P67,
           putative nearly identical to 67kD chloroplastic
           RNA-binding protein, P67 [Arabidopsis thaliana]
           GI:9755842
          Length = 688

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +2

Query: 305 DEYGRRARVELRSASWHRGLQELWRL----FAVVVRMLGNVGDW 424
           D YGR   V++  + + R   E WR+    F+ ++R+ G  G++
Sbjct: 239 DAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNY 282


>At4g03430.1 68417.m00470 pre-mRNA splicing factor-related similar
           to pre-mRNA splicing factor pre-mRNA splicing factor
           prp1 (SP:Q12381) [Fission yeast]
          Length = 1029

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 320 RARVELRSASWHRGLQELWRLFAVVVRMLGNV 415
           RAR+ L  A    G + +W   A+V R LGNV
Sbjct: 745 RARMLLAKARERGGTERVWMKSAIVERELGNV 776


>At4g15093.1 68417.m02319 catalytic LigB subunit of aromatic
           ring-opening dioxygenase family contains Pfam PF02900:
           Catalytic LigB subunit of aromatic ring-opening
           dioxygenase
          Length = 269

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 528 LHDFAGFPAPVF*LAY 481
           +HDF+GFP P++ L Y
Sbjct: 67  IHDFSGFPDPMYKLKY 82


>At3g62110.1 68416.m06978 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to polygalacturonase [Lycopersicon
           esculentum] GI:4325090; contains PF00295: Glycosyl
           hydrolases family 28
          Length = 471

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = -3

Query: 295 SLGNGDSVTSNAHRVLXWVWRLTDHLTTASNGSDSSSRGTEYSTXCRTARRAYSKARM 122
           S G G  +    HR L +   LTD + T  NG+    +GT +    R     Y++  +
Sbjct: 125 SYGRGRELPGRRHRSLIYGQNLTDVVITGENGT-IDGQGTVWWDWFRNGELNYTRPHL 181


>At2g18730.1 68415.m02181 diacylglycerol kinase, putative contains
           INTERPRO domain, IPR001206, DAG-kinase catalytic domain
          Length = 488

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +3

Query: 294 DAPLTSMDVERALSFAPRRGTAVFKSSGGC---SLSWFGCWEMSATGRLIL 437
           D+P++  D  +    A R  TA  K+  GC   +L+W G  ++    RL++
Sbjct: 2   DSPVSKTDASKEKFVASRPSTADSKTMRGCGLANLAWVGVDKVELRQRLMM 52


>At1g60770.1 68414.m06841 pentatricopeptide (PPR) repeat-containing
           protein low similarity to DNA-binding protein [Triticum
           aestivum] GI:6958202; contains Pfam profile PF01535: PPR
           repeat
          Length = 491

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 445 ASYNIKRPVADISQHPNHDSEQPPELLKTAVPRRGAKLNARSTSILV 305
           ++Y+I+     I  +      Q    LK   PRRG KLNA++  I +
Sbjct: 330 STYDIRIVNVLIGAYAQEGLIQKANELKEKAPRRGGKLNAKTWEIFM 376


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,657,137
Number of Sequences: 28952
Number of extensions: 187075
Number of successful extensions: 572
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)