BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= tesS0460 (331 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz... 128 3e-31 SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz... 128 3e-31 SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 25 3.9 SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met... 23 9.0 >SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schizosaccharomyces pombe|chr 2|||Manual Length = 192 Score = 128 bits (308), Expect = 3e-31 Identities = 59/79 (74%), Positives = 67/79 (84%) Frame = +2 Query: 20 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLXE 199 P SKTY PRRPFE ARLD ELK+ GEYGLRNK E+WRV TL++IR+AARELLTL E Sbjct: 5 PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64 Query: 200 KDPKRLFEGNALLRRLVRM 256 KDPKRLFEGNA++RRLVR+ Sbjct: 65 KDPKRLFEGNAIIRRLVRL 83 Score = 36.7 bits (81), Expect = 0.001 Identities = 16/25 (64%), Positives = 19/25 (76%) Frame = +1 Query: 256 GVLDEKQMKLXYXLGLKNEDFLXRR 330 G+LDE +MKL Y L L+ EDFL RR Sbjct: 84 GILDESRMKLDYVLALRIEDFLERR 108 >SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schizosaccharomyces pombe|chr 1|||Manual Length = 191 Score = 128 bits (308), Expect = 3e-31 Identities = 59/79 (74%), Positives = 67/79 (84%) Frame = +2 Query: 20 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLXE 199 P SKTY PRRPFE ARLD ELK+ GEYGLRNK E+WRV TL++IR+AARELLTL E Sbjct: 5 PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64 Query: 200 KDPKRLFEGNALLRRLVRM 256 KDPKRLFEGNA++RRLVR+ Sbjct: 65 KDPKRLFEGNAIIRRLVRL 83 Score = 36.3 bits (80), Expect = 0.001 Identities = 16/25 (64%), Positives = 19/25 (76%) Frame = +1 Query: 256 GVLDEKQMKLXYXLGLKNEDFLXRR 330 G+LDE +MKL Y L L+ EDFL RR Sbjct: 84 GILDETRMKLDYVLALRIEDFLERR 108 >SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit Rpc2|Schizosaccharomyces pombe|chr 1|||Manual Length = 1165 Score = 24.6 bits (51), Expect = 3.9 Identities = 11/36 (30%), Positives = 18/36 (50%) Frame = -2 Query: 144 LTRHTSRLLRRPYSPMIFNSWSRRAFSKGRRGVTYV 37 LT H+ + + + +WS + F R GVT+V Sbjct: 433 LTVHSDHITQGMVRALSTGNWSLKRFKMERAGVTHV 468 >SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met11|Schizosaccharomyces pombe|chr 1|||Manual Length = 641 Score = 23.4 bits (48), Expect = 9.0 Identities = 9/19 (47%), Positives = 14/19 (73%) Frame = +2 Query: 65 EKARLDQELKIIGEYGLRN 121 +KA +D+ L+ EYG+RN Sbjct: 88 DKAIIDKALETAKEYGIRN 106 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,179,491 Number of Sequences: 5004 Number of extensions: 19002 Number of successful extensions: 51 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 51 length of database: 2,362,478 effective HSP length: 64 effective length of database: 2,042,222 effective search space used: 91899990 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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