Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0460
         (331 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   128   3e-31
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   128   3e-31
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    25   3.9  
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    23   9.0  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  128 bits (308), Expect = 3e-31
 Identities = 59/79 (74%), Positives = 67/79 (84%)
 Frame = +2

Query: 20  PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLXE 199
           P   SKTY  PRRPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL E
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 200 KDPKRLFEGNALLRRLVRM 256
           KDPKRLFEGNA++RRLVR+
Sbjct: 65  KDPKRLFEGNAIIRRLVRL 83



 Score = 36.7 bits (81), Expect = 0.001
 Identities = 16/25 (64%), Positives = 19/25 (76%)
 Frame = +1

Query: 256 GVLDEKQMKLXYXLGLKNEDFLXRR 330
           G+LDE +MKL Y L L+ EDFL RR
Sbjct: 84  GILDESRMKLDYVLALRIEDFLERR 108


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  128 bits (308), Expect = 3e-31
 Identities = 59/79 (74%), Positives = 67/79 (84%)
 Frame = +2

Query: 20  PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLXE 199
           P   SKTY  PRRPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL E
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 200 KDPKRLFEGNALLRRLVRM 256
           KDPKRLFEGNA++RRLVR+
Sbjct: 65  KDPKRLFEGNAIIRRLVRL 83



 Score = 36.3 bits (80), Expect = 0.001
 Identities = 16/25 (64%), Positives = 19/25 (76%)
 Frame = +1

Query: 256 GVLDEKQMKLXYXLGLKNEDFLXRR 330
           G+LDE +MKL Y L L+ EDFL RR
Sbjct: 84  GILDETRMKLDYVLALRIEDFLERR 108


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 144 LTRHTSRLLRRPYSPMIFNSWSRRAFSKGRRGVTYV 37
           LT H+  + +     +   +WS + F   R GVT+V
Sbjct: 433 LTVHSDHITQGMVRALSTGNWSLKRFKMERAGVTHV 468


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 65  EKARLDQELKIIGEYGLRN 121
           +KA +D+ L+   EYG+RN
Sbjct: 88  DKAIIDKALETAKEYGIRN 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,179,491
Number of Sequences: 5004
Number of extensions: 19002
Number of successful extensions: 51
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)