Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0460
(331 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 111 1e-25
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 111 1e-25
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 110 2e-25
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 80 4e-16
07_03_1358 - 25984897-25984997,25985623-25985650 47 4e-06
02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797 28 1.5
01_06_1276 - 35918954-35919106,35919220-35919325,35919477-359195... 28 1.5
08_02_0251 - 14776308-14776495,14777624-14777708,14779125-147791... 27 2.7
08_02_0531 + 18256597-18256836,18257637-18257735,18258038-182581... 27 3.6
03_04_0181 - 18192774-18192970,18193519-18193882 26 6.2
10_08_0989 + 22069244-22071679 26 8.3
05_05_0042 - 21798255-21798871,21799400-21799777,21799861-218008... 26 8.3
03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,634... 26 8.3
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 111 bits (268), Expect = 1e-25
Identities = 50/75 (66%), Positives = 62/75 (82%)
Frame = +2
Query: 29 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLXEKDP 208
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL EK+P
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 69
Query: 209 KRLFEGNALLRRLVR 253
+R+FEG ALLRR+ R
Sbjct: 70 RRIFEGEALLRRMNR 84
Score = 29.1 bits (62), Expect = 0.89
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +1
Query: 253 YGVLDEKQMKLXYXLGLKNEDFLXRR 330
YG+L + Q KL Y L L E+FL RR
Sbjct: 85 YGLLADGQNKLDYVLALTVENFLARR 110
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 111 bits (268), Expect = 1e-25
Identities = 50/75 (66%), Positives = 62/75 (82%)
Frame = +2
Query: 29 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLXEKDP 208
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL EK+P
Sbjct: 226 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 285
Query: 209 KRLFEGNALLRRLVR 253
+R+FEG ALLRR+ R
Sbjct: 286 RRIFEGEALLRRMNR 300
Score = 29.1 bits (62), Expect = 0.89
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +1
Query: 253 YGVLDEKQMKLXYXLGLKNEDFLXRR 330
YG+L + Q KL Y L L E+FL RR
Sbjct: 301 YGLLADGQNKLDYVLALTVENFLARR 326
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 110 bits (265), Expect = 2e-25
Identities = 50/73 (68%), Positives = 61/73 (83%)
Frame = +2
Query: 35 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLXEKDPKR 214
KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL EK+P+R
Sbjct: 35 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRR 94
Query: 215 LFEGNALLRRLVR 253
+FEG ALLRR+ R
Sbjct: 95 IFEGEALLRRMNR 107
Score = 29.1 bits (62), Expect = 0.89
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +1
Query: 253 YGVLDEKQMKLXYXLGLKNEDFLXRR 330
YG+L + Q KL Y L L E+FL RR
Sbjct: 108 YGLLADGQNKLDYVLALTVENFLARR 133
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 80.2 bits (189), Expect = 4e-16
Identities = 41/75 (54%), Positives = 52/75 (69%)
Frame = +2
Query: 29 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLXEKDP 208
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV +ELLTL EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRV-----------QELLTLDEKNP 58
Query: 209 KRLFEGNALLRRLVR 253
+R+FEG ALLR + R
Sbjct: 59 RRIFEGEALLRHMNR 73
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +1
Query: 253 YGVLDEKQMKLXYXLGLKNEDFLXRR 330
YG+L E Q KL Y L L E+FL R
Sbjct: 74 YGLLGEGQNKLDYVLALTVENFLQCR 99
>07_03_1358 - 25984897-25984997,25985623-25985650
Length = 42
Score = 46.8 bits (106), Expect = 4e-06
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +2
Query: 29 FSKTYVTPRRPFEKARLDQELKIIGEYG 112
+ KT+ PRRP+EK RLD ELK++GEYG
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYG 37
>02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797
Length = 918
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 125 REVWRVKYTLARIRKAARELLTLXEKDPKRLFEGNALLRRLVRMEY 262
+ V ++Y +IR A EL DPK + + +L+ L EY
Sbjct: 593 KSVQAIRYQTPQIRSALLELEKASTDDPKAVSDAQSLVTALENFEY 638
>01_06_1276 -
35918954-35919106,35919220-35919325,35919477-35919574,
35919693-35919757,35919877-35920033,35920177-35920268,
35920379-35920493,35920574-35920622,35920705-35920858,
35920993-35921019,35921530-35921707,35922326-35922685,
35922979-35922987,35923170-35923238
Length = 543
Score = 28.3 bits (60), Expect = 1.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 263 STPYEPDDVEGHYLRTISWGPSPR 192
S P+ PDD +GHY+ + +PR
Sbjct: 182 SPPWRPDDKDGHYVFAVGENLTPR 205
>08_02_0251 -
14776308-14776495,14777624-14777708,14779125-14779160,
14779930-14780177,14780670-14780901,14781159-14781937,
14781987-14782155
Length = 578
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = -3
Query: 140 RAILHACCGDRTLR*SSTLGQDVPFQKDDEVSRTSLKIPTVLC 12
R I+H C + T R LG D DE S S K LC
Sbjct: 265 REIIHCCADETTKRIIEELGDDYYAILADECSDLSYKEQLALC 307
>08_02_0531 +
18256597-18256836,18257637-18257735,18258038-18258184,
18258295-18258427,18258521-18258585,18258792-18258962,
18259095-18259199,18259495-18259602,18259792-18260088,
18260191-18260256,18260477-18260679,18261178-18261232,
18261318-18261503,18261701-18261985
Length = 719
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 62 FEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKA 172
FE A+ ++ KII E R+ ++ +KY LA A
Sbjct: 394 FEMAKQEESKKIISEEHQRSNEQITDLKYKLANCMNA 430
>03_04_0181 - 18192774-18192970,18193519-18193882
Length = 186
Score = 26.2 bits (55), Expect = 6.2
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -3
Query: 182 AHEQPYGYERACI*RAILHACCGDRTLR*SSTLGQDVPFQKDD 54
+H + + R R +H CG +LR S TLG PF + D
Sbjct: 70 SHHRHRNHPRVQRHRRAIHKTCGAISLRPSLTLGFMPPFLRRD 112
>10_08_0989 + 22069244-22071679
Length = 811
Score = 25.8 bits (54), Expect = 8.3
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = -3
Query: 140 RAILHACCGDRTLR*SSTLGQDVPFQKDDEVSRTSLKIPTVLC 12
R I+H C + T R LG D DE S S K LC
Sbjct: 280 REIIHCCADETTKRIIEELGDDHYAILADECSDLSHKEQLALC 322
>05_05_0042 -
21798255-21798871,21799400-21799777,21799861-21800820,
21800918-21800957,21801471-21801766,21802696-21802774,
21803013-21803100,21803189-21803273,21803364-21803625,
21803720-21805027,21806187-21806393,21807288-21807519,
21808267-21808353,21808427-21808735,21808879-21808957,
21809788-21809867,21809952-21810029,21810744-21810831,
21811102-21811241,21811342-21811415,21812043-21812125,
21812403-21812516,21813975-21814136,21814377-21814641
Length = 2036
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 119 CGDRTLR*SSTLGQDVPFQKDDEVSRTSLKI 27
CGD T S + D+P Q+ V +SL++
Sbjct: 683 CGDATFTDSPSTAMDIPEQRFSPVGLSSLEV 713
>03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,
6349369-6349475,6349608-6349733,6349809-6349890,
6350057-6350130,6351184-6352631,6353391-6353540,
6353664-6353906,6354009-6354266,6355554-6356015
Length = 1130
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 142 DAPYFTLVAETVLSDDLQLLVKTC 71
D PYF+L A ++D ++LVK C
Sbjct: 1017 DTPYFSLDACCFINDIQEVLVKLC 1040
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,562,274
Number of Sequences: 37544
Number of extensions: 132199
Number of successful extensions: 263
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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