Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0460
         (331 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)             141   1e-34
SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.40 
SB_25059| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.9  
SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.5  
SB_56055| Best HMM Match : TSP_1 (HMM E-Value=6.5e-05)                 26   8.5  
SB_13488| Best HMM Match : WSC (HMM E-Value=3.6)                       26   8.5  
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.5  
SB_12678| Best HMM Match : WSC (HMM E-Value=3.8)                       26   8.5  
SB_5403| Best HMM Match : TSP_1 (HMM E-Value=0)                        26   8.5  

>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score =  141 bits (342), Expect = 1e-34
 Identities = 68/77 (88%), Positives = 72/77 (93%)
 Frame = +2

Query: 26  VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLXEKD 205
           V SKTY TPRRPFEK RL+QELKIIGEYGLRNKREVWRVK TLA+IRKAARELLTL EKD
Sbjct: 5   VCSKTYTTPRRPFEKERLNQELKIIGEYGLRNKREVWRVKLTLAKIRKAARELLTLEEKD 64

Query: 206 PKRLFEGNALLRRLVRM 256
           P+RLFEGNALLRRLVR+
Sbjct: 65  PRRLFEGNALLRRLVRI 81



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 17/25 (68%), Positives = 19/25 (76%)
 Frame = +1

Query: 256 GVLDEKQMKLXYXLGLKNEDFLXRR 330
           GVLDE + KL Y LGL+ EDFL RR
Sbjct: 82  GVLDESRKKLDYVLGLRIEDFLERR 106


>SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +2

Query: 53  RRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLXEKDPK 211
           +RP  K  L Q+   +G+YG   KR+   V         AARE+L +    PK
Sbjct: 57  KRPLGKELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPK 109


>SB_25059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 71  ARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAA 175
           A +D+ELK I    L+N+  V  ++Y+    RKAA
Sbjct: 513 AEIDEELKTIKLLDLKNQTVVLPMQYSPRTTRKAA 547


>SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2060

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -1

Query: 130  FTLVAETVLSDDLQLLVKTCLFKRTTRCHVRL 35
            FT++++  ++D ++ L+  CL    T   +RL
Sbjct: 1620 FTVISDKTVADTIEALIGACLMSSGTNAALRL 1651


>SB_56055| Best HMM Match : TSP_1 (HMM E-Value=6.5e-05)
          Length = 374

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
 Frame = +2

Query: 17  VPSVFSKTYVTPRRP-----FEKARLDQELKIIGEYGLRNKREVW 136
           +P+ F K     + P     FEK R++ E      +GL+N +E W
Sbjct: 36  MPNFFKKIEYDKKNPNFQDMFEKCRVEAEKLGYTYFGLQNMKECW 80


>SB_13488| Best HMM Match : WSC (HMM E-Value=3.6)
          Length = 97

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
 Frame = +2

Query: 17  VPSVFSKTYVTPRRP-----FEKARLDQELKIIGEYGLRNKREVW 136
           +P+ F K     + P     FEK R++ E      +GL+N +E W
Sbjct: 16  MPNFFKKIEYDKKNPNFQDMFEKCRVEAEKLGYTYFGLQNMKECW 60


>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 964

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +1

Query: 130 SMARQIHARSYP*GCS*APHPRGEGPQEIVR 222
           S  RQIH    P      P  +G GPQE VR
Sbjct: 249 SRRRQIHNGGIPGTSGSGPRAQGMGPQEGVR 279


>SB_12678| Best HMM Match : WSC (HMM E-Value=3.8)
          Length = 117

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
 Frame = +2

Query: 17  VPSVFSKTYVTPRRP-----FEKARLDQELKIIGEYGLRNKREVW 136
           +P+ F K     + P     FEK R++ E      +GL+N +E W
Sbjct: 36  MPNFFKKIEYDKKNPNFQDMFEKCRVEAEKLGYTYFGLQNMKECW 80


>SB_5403| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 684

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
 Frame = +2

Query: 17  VPSVFSKTYVTPRRP-----FEKARLDQELKIIGEYGLRNKREVW 136
           +P+ F K     + P     FEK R++ E      +GL+N +E W
Sbjct: 36  MPNFFKKIEYDKKNPNFQDMFEKCRVEAEKLGYTYFGLQNMKECW 80


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,878,412
Number of Sequences: 59808
Number of extensions: 153745
Number of successful extensions: 433
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 463065397
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)