Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0460
         (331 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...   133   3e-32
U64847-11|AAB04878.2|  151|Caenorhabditis elegans Hypothetical p...    27   4.2  
AL032639-7|CAA21631.2|  465|Caenorhabditis elegans Hypothetical ...    27   4.2  

>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score =  133 bits (321), Expect = 3e-32
 Identities = 62/81 (76%), Positives = 73/81 (90%)
 Frame = +2

Query: 14  RVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 193
           R+ +V SK   +PRRPFEK RLDQELK+IG +GL+NKREVWRVKYTLA++RKAARELLTL
Sbjct: 3   RLKTVQSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTL 62

Query: 194 XEKDPKRLFEGNALLRRLVRM 256
            +KDPKRLFEGNALLRRLV++
Sbjct: 63  EDKDPKRLFEGNALLRRLVKI 83



 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 19/25 (76%), Positives = 20/25 (80%)
 Frame = +1

Query: 256 GVLDEKQMKLXYXLGLKNEDFLXRR 330
           GVLDE +MKL Y LGLK EDFL RR
Sbjct: 84  GVLDETKMKLDYVLGLKVEDFLERR 108


>U64847-11|AAB04878.2|  151|Caenorhabditis elegans Hypothetical
           protein F08F3.1 protein.
          Length = 151

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 17  VPSVFSKTYVTPRRPFEKARLDQELKI 97
           VP   ++T VTP RP EK +  ++++I
Sbjct: 74  VPVFHNETTVTPERPIEKKKRVRQIQI 100


>AL032639-7|CAA21631.2|  465|Caenorhabditis elegans Hypothetical
           protein Y38F1A.6 protein.
          Length = 465

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 125 ACCGDRTLR*SSTLGQDVPFQKDDE-VSRT 39
           A C DR L  + TLG D+P    +E +SRT
Sbjct: 371 AACPDRHLISAQTLGADIPNNASNEYISRT 400


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,437,839
Number of Sequences: 27780
Number of extensions: 110365
Number of successful extensions: 269
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)