Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0460
         (331 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri...   122   8e-29
At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri...   118   7e-28
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si...    29   1.00 
At4g32190.1 68417.m04581 centromeric protein-related low similar...    28   1.7  
At3g53570.3 68416.m05915 protein kinase (AFC1) (AME2) identical ...    27   2.3  
At3g53570.2 68416.m05916 protein kinase (AFC1) (AME2) identical ...    27   2.3  
At3g53570.1 68416.m05917 protein kinase (AFC1) (AME2) identical ...    27   2.3  
At4g15880.1 68417.m02413 Ulp1 protease family protein contains P...    27   3.0  
At5g40470.1 68418.m04908 expressed protein                             26   7.0  

>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
           ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
          Length = 197

 Score =  122 bits (293), Expect = 8e-29
 Identities = 57/84 (67%), Positives = 69/84 (82%)
 Frame = +2

Query: 2   MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 181
           MVN R    + KT+  PRRP+EK RLD ELK++GEYGLR KRE+WRV+YTL+RIR AARE
Sbjct: 1   MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARE 60

Query: 182 LLTLXEKDPKRLFEGNALLRRLVR 253
           LLTL EK+P+R+FEG ALLRR+ R
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNR 84



 Score = 33.9 bits (74), Expect = 0.026
 Identities = 16/26 (61%), Positives = 18/26 (69%)
 Frame = +1

Query: 253 YGVLDEKQMKLXYXLGLKNEDFLXRR 330
           YG+LDE Q KL Y L L  E+FL RR
Sbjct: 85  YGLLDETQNKLDYVLALTVENFLERR 110


>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
           ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
          Length = 198

 Score =  118 bits (285), Expect = 7e-28
 Identities = 52/75 (69%), Positives = 65/75 (86%)
 Frame = +2

Query: 29  FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLXEKDP 208
           + KT+  PRRP+EK RLD ELK++GEYGLRNKRE+WRV+Y+L+RIR AAR+LLTL EK P
Sbjct: 10  YGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSP 69

Query: 209 KRLFEGNALLRRLVR 253
           +R+FEG ALLRR+ R
Sbjct: 70  RRIFEGEALLRRMNR 84



 Score = 34.3 bits (75), Expect = 0.020
 Identities = 16/26 (61%), Positives = 18/26 (69%)
 Frame = +1

Query: 253 YGVLDEKQMKLXYXLGLKNEDFLXRR 330
           YG+LDE Q KL Y L L  E+FL RR
Sbjct: 85  YGLLDESQNKLDYVLALTVENFLERR 110


>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
           similar to chloroplast membrane protein (ALBINO3)
           (GI:3927828) [Arabidopsis thaliana]
          Length = 1013

 Score = 28.7 bits (61), Expect = 1.00
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +2

Query: 35  KTYVTPRR-PFEKARLDQ-ELKIIGEYGLRNKREVWRVKYT 151
           K ++ PRR P  +    Q E K   EYG RN  E W +  T
Sbjct: 479 KYFIKPRRHPESECSATQTEYKFTSEYGKRNSSECWAMTTT 519


>At4g32190.1 68417.m04581 centromeric protein-related low similarity
           to SP|Q02224 Centromeric protein E (CENP-E protein)
           {Homo sapiens}
          Length = 783

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +2

Query: 104 EYGLRNKREVWRVKYTLARIRKAARELLTLXEKDPKRLFEGNALLRRLVRMEYWMK 271
           +YG+ NKR V  + +T   +R    E+L +      +  E N ++ RL   E  +K
Sbjct: 599 DYGMENKRLVMELSFTRENLRMKEMEVLAVQRALTFKDEEINVVMGRLEAKEQELK 654


>At3g53570.3 68416.m05915 protein kinase (AFC1) (AME2) identical to
           protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
          Length = 453

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 311 SFFXPSX*XSFICFSSSTPYEPDDVEGHYLRTISWGPSPR 192
           +F  P+   + +    S P+ PDD +GHY+  +    +PR
Sbjct: 61  NFVYPNMFYNGLPRQGSPPWRPDDKDGHYVFVVGDTLTPR 100


>At3g53570.2 68416.m05916 protein kinase (AFC1) (AME2) identical to
           protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
          Length = 467

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 311 SFFXPSX*XSFICFSSSTPYEPDDVEGHYLRTISWGPSPR 192
           +F  P+   + +    S P+ PDD +GHY+  +    +PR
Sbjct: 75  NFVYPNMFYNGLPRQGSPPWRPDDKDGHYVFVVGDTLTPR 114


>At3g53570.1 68416.m05917 protein kinase (AFC1) (AME2) identical to
           protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
          Length = 467

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 311 SFFXPSX*XSFICFSSSTPYEPDDVEGHYLRTISWGPSPR 192
           +F  P+   + +    S P+ PDD +GHY+  +    +PR
Sbjct: 75  NFVYPNMFYNGLPRQGSPPWRPDDKDGHYVFVVGDTLTPR 114


>At4g15880.1 68417.m02413 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; low similarity to
           sentrin/SUMO-specific protease [Homo sapiens]
           GI:6906859;  identical to cDNA hypothetical protein,
           partial (1189 bp) GI:2326349
          Length = 489

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 20  PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREV 133
           P    K    PR PF     D+E ++   +  RN+R+V
Sbjct: 242 PKTVEKRVEVPREPFIPLTEDEEAEVYRAFSGRNRRKV 279


>At5g40470.1 68418.m04908 expressed protein
          Length = 496

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 124 LVAETVLSDDLQLLVKTCLFKRTTRC 47
           L AET+ SD+L  ++ +C F     C
Sbjct: 103 LKAETIFSDELISIISSCCFNLRNLC 128


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,113,925
Number of Sequences: 28952
Number of extensions: 104432
Number of successful extensions: 269
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 380568784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)