Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0459
         (379 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                   36   0.011
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.011
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.033
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.033
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.033
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.033
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.033
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.077
SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)                     28   2.9  
SB_41988| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  

>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score = 35.9 bits (79), Expect = 0.011
 Identities = 31/108 (28%), Positives = 38/108 (35%), Gaps = 4/108 (3%)
 Frame = -1

Query: 319 LYTKXSXXYNIXXSKYNIFXTTFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXX 140
           LY K              F   FLGLAG PRRYSD+ D                      
Sbjct: 112 LYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVW 171

Query: 139 XXXXXXXXXINQ-RINLFSLNLPS---SIE*YQNLPPAEHXYNELPIL 8
                    + + +   +  N  S   S+E  Q  PPA H YNELP +
Sbjct: 172 FIFVVYDAYVREVKFIGWVENTGSSWPSLEWVQQSPPALHTYNELPFV 219



 Score = 30.3 bits (65), Expect = 0.54
 Identities = 18/43 (41%), Positives = 19/43 (44%)
 Frame = -2

Query: 378 AIMGGFIN*SPLFTXLSXNSYILKXXFXTIFXGVNITFXPQLF 250
           AI  GF       T    N    K  F  +F GVNITF PQ F
Sbjct: 92  AIFAGFYFWFGKITGYCYNELYGKIHFWIMFIGVNITFFPQHF 134


>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 35.9 bits (79), Expect = 0.011
 Identities = 31/108 (28%), Positives = 38/108 (35%), Gaps = 4/108 (3%)
 Frame = -1

Query: 319 LYTKXSXXYNIXXSKYNIFXTTFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXX 140
           LY K              F   FLGLAG PRRYSD+ D                      
Sbjct: 26  LYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVW 85

Query: 139 XXXXXXXXXINQ-RINLFSLNLPS---SIE*YQNLPPAEHXYNELPIL 8
                    + + +   +  N  S   S+E  Q  PPA H YNELP +
Sbjct: 86  FIFVVYDAYVREVKFIGWVENTGSSWPSLEWVQQSPPALHTYNELPFV 133



 Score = 30.3 bits (65), Expect = 0.54
 Identities = 18/43 (41%), Positives = 19/43 (44%)
 Frame = -2

Query: 378 AIMGGFIN*SPLFTXLSXNSYILKXXFXTIFXGVNITFXPQLF 250
           AI  GF       T    N    K  F  +F GVNITF PQ F
Sbjct: 6   AIFAGFYFWFGKITGYCYNELYGKIHFWIMFIGVNITFFPQHF 48


>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 34.3 bits (75), Expect = 0.033
 Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
 Frame = -1

Query: 253 FLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLNL 77
           FLGLAG PRRYSD+ D                               + + +   +  N 
Sbjct: 2   FLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENT 61

Query: 76  PS---SIE*YQNLPPAEHXYNELPIL 8
            S   S+E  Q  PPA H YNELP +
Sbjct: 62  GSSWPSLEWVQQSPPALHTYNELPFV 87


>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 34.3 bits (75), Expect = 0.033
 Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
 Frame = -1

Query: 253 FLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLNL 77
           FLGLAG PRRYSD+ D                               + + +   +  N 
Sbjct: 2   FLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENT 61

Query: 76  PS---SIE*YQNLPPAEHXYNELPIL 8
            S   S+E  Q  PPA H YNELP +
Sbjct: 62  GSSWPSLEWVQQSPPALHTYNELPFV 87


>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 34.3 bits (75), Expect = 0.033
 Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
 Frame = -1

Query: 253 FLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLNL 77
           FLGLAG PRRYSD+ D                               + + +   +  N 
Sbjct: 2   FLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENT 61

Query: 76  PS---SIE*YQNLPPAEHXYNELPIL 8
            S   S+E  Q  PPA H YNELP +
Sbjct: 62  GSSWPSLEWVQQSPPALHTYNELPFV 87


>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 34.3 bits (75), Expect = 0.033
 Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
 Frame = -1

Query: 253 FLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLNL 77
           FLGLAG PRRYSD+ D                               + + +   +  N 
Sbjct: 2   FLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENT 61

Query: 76  PS---SIE*YQNLPPAEHXYNELPIL 8
            S   S+E  Q  PPA H YNELP +
Sbjct: 62  GSSWPSLEWVQQSPPALHTYNELPFV 87


>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 34.3 bits (75), Expect = 0.033
 Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
 Frame = -1

Query: 253 FLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLNL 77
           FLGLAG PRRYSD+ D                               + + +   +  N 
Sbjct: 2   FLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENT 61

Query: 76  PS---SIE*YQNLPPAEHXYNELPIL 8
            S   S+E  Q  PPA H YNELP +
Sbjct: 62  GSSWPSLEWVQQSPPALHTYNELPFV 87


>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 33.1 bits (72), Expect = 0.077
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = -1

Query: 253 FLGLAGIPRRYSDYPD 206
           FLGLAG PRRYSD+ D
Sbjct: 2   FLGLAGFPRRYSDFAD 17


>SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)
          Length = 319

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 81  ISHHQLNDIKIYHQQNIXIMNYQF 10
           I+HHQ + I I H Q+  I+NY +
Sbjct: 296 INHHQSSSIIINHHQSSSIINYYY 319


>SB_41988| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 276

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 377 QLWGDLLTDPLYLQXFXXILIY*KXXFXQY 288
           ++W   LT  LYLQ F  +L+  K  F  Y
Sbjct: 57  KVWQLALTQTLYLQGFHRVLVCLKHFFASY 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,088,727
Number of Sequences: 59808
Number of extensions: 82308
Number of successful extensions: 105
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)