Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0457
(647 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 173 2e-44
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 83 3e-17
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 82 6e-17
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 58 1e-09
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 27 1.8
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces... 27 2.3
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 27 2.3
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 27 3.1
SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce... 25 9.4
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|... 25 9.4
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 9.4
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 173 bits (421), Expect = 2e-44
Identities = 79/125 (63%), Positives = 98/125 (78%)
Frame = +2
Query: 254 RGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQTI 433
RG++SMKEVDEQ+ ++Q KNS YFVEWIP+N AVC +PP+ LKM++TFIGN+T+IQ I
Sbjct: 318 RGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEI 377
Query: 434 FKRVSEQFVAMFRRXAFLHWYTGEGWMKWSSRRAESNMNDLISEYQQYQDATADDEGSST 613
F+R+ +QF AMFRR AFLHWYTGEG + AESNMNDL+SEYQQYQ+A DEG
Sbjct: 378 FRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEA-GIDEGDED 436
Query: 614 RKAEE 628
+ EE
Sbjct: 437 YEIEE 441
Score = 140 bits (338), Expect = 2e-34
Identities = 64/105 (60%), Positives = 81/105 (77%)
Frame = +3
Query: 3 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQM 182
+G+TT RFPG+LN+DLRKLAVNMVPFPRLHF+ GFAPL + G+ ++A++VPELT QM
Sbjct: 234 AGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQM 293
Query: 183 FXAKNMMVACDPRHGRYLTVATIFGGECL*KKLTSNWRIFRTKTA 317
F A NMMVA DPRHGRYLTVA +F G+ K++ R +TK +
Sbjct: 294 FDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNS 338
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 83.0 bits (196), Expect = 3e-17
Identities = 37/89 (41%), Positives = 52/89 (58%)
Frame = +3
Query: 3 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQM 182
S IT LRF G LN DL + N+VP+PR+HF +AP+ S + + +V E+T Q
Sbjct: 236 SSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQC 295
Query: 183 FXAKNMMVACDPRHGRYLTVATIFGGECL 269
F N MV CDPR GRY+ ++ G+ +
Sbjct: 296 FEPYNQMVKCDPRAGRYMATCLLYRGDVI 324
Score = 70.1 bits (164), Expect = 3e-13
Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 9/124 (7%)
Frame = +2
Query: 254 RGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLK--------MASTFIG 409
RG + ++V + I+ K + FV+W P KI +CD PP+ ++ A +
Sbjct: 320 RGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLS 379
Query: 410 NTTAIQTIFKRVSEQFVAMFRRXAFLHWYTGEGWMKWSSRRAESNMNDLISEYQQY-QDA 586
NTT+I + R+ +F M+ + AF+HWY GEG + A ++ L +Y++ QD+
Sbjct: 380 NTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 439
Query: 587 TADD 598
D
Sbjct: 440 MEVD 443
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 82.2 bits (194), Expect = 6e-17
Identities = 36/89 (40%), Positives = 52/89 (58%)
Frame = +3
Query: 3 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQM 182
S IT LRF G LN DL + N+VP+PR+HF ++P+ S + + +V E+T Q
Sbjct: 240 SSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQC 299
Query: 183 FXAKNMMVACDPRHGRYLTVATIFGGECL 269
F N MV CDPR GRY+ ++ G+ +
Sbjct: 300 FEPYNQMVKCDPRTGRYMATCLLYRGDVI 328
Score = 68.5 bits (160), Expect = 8e-13
Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 8/124 (6%)
Frame = +2
Query: 254 RGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGL--------KMASTFIG 409
RG + ++V + +I+++ + FV+W P KI +C PP+ + A +
Sbjct: 324 RGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLS 383
Query: 410 NTTAIQTIFKRVSEQFVAMFRRXAFLHWYTGEGWMKWSSRRAESNMNDLISEYQQYQDAT 589
NTT+I + R+ +F M+ + AF+HWY GEG + A ++ L +Y++ +
Sbjct: 384 NTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 443
Query: 590 ADDE 601
D+E
Sbjct: 444 MDNE 447
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 58.0 bits (134), Expect = 1e-09
Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Frame = +3
Query: 3 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRAL---TVPELT 173
S TT LR+PG +N DL + +++P PR HF + P T++ ++ +A+ TV ++
Sbjct: 237 SASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVM 296
Query: 174 LQMFXAKNMMVACDP-RHGRYLTVATIFGGE 263
++ KN MV+ +P + ++++ I GE
Sbjct: 297 RRLLLPKNQMVSVNPSKKSCFISILDIIQGE 327
Score = 50.8 bits (116), Expect = 2e-07
Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Frame = +2
Query: 245 DDIRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPP---RGLKMASTFIGNT 415
D I+G +V + L I+ + F+ W P + ++A+ P +++ + N
Sbjct: 322 DIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGLMLANH 381
Query: 416 TAIQTIFKRVSEQFVAMFRRXAFLHWYTGEGWMKWSSRRAESNMN---DLISEYQQYQD 583
T+I ++FKR +Q+ + +R AFL Y E + +S+ + DLI+EY+ +D
Sbjct: 382 TSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYEACED 440
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -3
Query: 297 FASCSSTSFIDIRPRISSQRSNTSRVEDHTRPSCFWXRTFAASARVQL 154
F+ C T I P + N + + D ++ FW + F ASA V L
Sbjct: 25 FSKCHRTVTTKILPIVEKYAKNCNTIWDSSK---FWKQFFEASANVSL 69
>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +3
Query: 291 WRIFRTKTARILSSGYPITARLPCVTYLRGVLKWLRPSL--VTRRPYRPYSRGCLSSSWL 464
+R+ K+ ++++ GYP R+P V L+ +L+ + V PY S S +W+
Sbjct: 208 FRLRSQKSDKVMNKGYPFGYRIPSVGQLQLILRQTNGLVIKVFLVPYNVSSMVDCSKTWI 267
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +2
Query: 146 SSFNCTRADAANVRXQKHDGRV*SSTREVFDRCDDIRGRMSMKEVDEQLANIQNK 310
S+ N R D + + STR DR D G S++E+D+Q +N+
Sbjct: 253 SANNSMRDDKKRNHKSSYKRSLSPSTRYHQDRPDKRHGTYSLEEIDKQRKEFENR 307
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = +3
Query: 102 TPGFAPLTSRGAQQYRALTVPELTLQMFXAKNMMVACDPRHGRYLTVATIFGGECL 269
TP A ++ Y A+++ +L + M + +GRYL GG C+
Sbjct: 446 TPILAVASNSIVSMYNAISLQQLAVFMRHTAPVSALSFSHNGRYLATGDTSGGVCI 501
>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 509 WMKWSSRRAESNMNDLISEYQQYQDATADDE 601
++K S +E + DL SE + YQ +++DE
Sbjct: 27 FVKDDSENSEEELEDLNSEDEFYQSNSSEDE 57
>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
3|||Manual
Length = 834
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 554 LISEYQQYQDATADDEGSSTRKA 622
L+S +YQD TADD T +A
Sbjct: 789 LVSNLARYQDVTADDTFVETSEA 811
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 424 YGRRVTNEGRSHFKTPRRYVTHGN 353
+ RR NE R++ +PR + THGN
Sbjct: 254 FRRREDNE-RNNSNSPRNFSTHGN 276
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,731,311
Number of Sequences: 5004
Number of extensions: 57569
Number of successful extensions: 204
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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