Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0456
         (556 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0329 - 21037980-21038378,21038517-21038737,21038827-210389...    31   0.62 
06_01_0816 - 6171189-6171255,6171277-6171441,6172037-6172618,617...    29   2.5  
09_04_0500 - 18120287-18122233                                         29   3.3  
11_03_0128 - 10437407-10438049,10438097-10438272                       28   4.4  
08_02_0592 + 19064025-19066596,19067036-19067084,19068530-190686...    28   5.8  
05_06_0216 - 26453029-26454597                                         27   7.6  

>01_05_0329 -
           21037980-21038378,21038517-21038737,21038827-21038905,
           21039002-21039071,21039144-21039255,21039359-21039398,
           21039482-21039676,21039925-21040044,21040684-21041106,
           21042386-21042928
          Length = 733

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -3

Query: 461 TTTANSLQSS*RPRCHDAERSSTRALRPYSSEERR 357
           T T +   +S RPR  D+E  ++  L PYSSE++R
Sbjct: 444 TITDSGEDNSRRPRSGDSEIPNSSKLEPYSSEQQR 478


>06_01_0816 -
           6171189-6171255,6171277-6171441,6172037-6172618,
           6173451-6173761
          Length = 374

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 148 GLVVLGPEDWSEISVLNWSQKIS 80
           G VV GP  W EI +  WSQ+ S
Sbjct: 42  GRVVAGPYCWQEIDIQEWSQQQS 64


>09_04_0500 - 18120287-18122233
          Length = 648

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 340 AVSVPERRSSDEYGRRARVELRSASWHR 423
           AV+V +R  S EY   +R E RS SW R
Sbjct: 2   AVAVLDRSFSSEYPASSRTEGRSCSWKR 29


>11_03_0128 - 10437407-10438049,10438097-10438272
          Length = 272

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 252 SRGTEYSTTCRTARRAYSKARMACDTGGKAS 160
           S  +  STTCRT  RA   +   C TG + S
Sbjct: 134 STASTSSTTCRTCCRATPNSTSPCKTGSRCS 164


>08_02_0592 +
           19064025-19066596,19067036-19067084,19068530-19068605,
           19068767-19068922
          Length = 950

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -2

Query: 426 TAVPRRGAKLNARSTXILVRGASLGNGDSVTSNAHRSSHLGM 301
           TA P  G+K ++    ++ + AS+  GDS+ +NAH   H  M
Sbjct: 174 TAAPLAGSKDDSAVPGVVEKVASVDGGDSM-ANAHHHHHAMM 214


>05_06_0216 - 26453029-26454597
          Length = 522

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 99  TGPRRFLLSLVPNSCSPGDPLV 34
           TGP R++   VP+SCSP  PL+
Sbjct: 355 TGPERWI---VPSSCSPSPPLL 373


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,386,061
Number of Sequences: 37544
Number of extensions: 257092
Number of successful extensions: 727
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)