Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0456
         (556 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical pr...    28   3.9  
M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z78065-3|CAB01517.2|  406|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U50301-2|AAM29675.1|  362|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical protein
            ZK370.4b protein.
          Length = 1353

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 394  VELRSASWHRGLQELWR 444
            VE R+ASW  G+  LWR
Sbjct: 993  VETRAASWFNGMSSLWR 1009


>M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical protein
            ZK370.4a protein.
          Length = 1342

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 394  VELRSASWHRGLQELWR 444
            VE R+ASW  G+  LWR
Sbjct: 982  VETRAASWFNGMSSLWR 998


>Z78065-3|CAB01517.2|  406|Caenorhabditis elegans Hypothetical
           protein T09E8.4 protein.
          Length = 406

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 159 WLLKAWLF*VLK-TGVKFRY*TGPRRFLLSLVPNSCSPGDPLVLERPPPRW 10
           W+L A +  +L     K+ +   P  F+L+     C P   +V + PPPRW
Sbjct: 229 WILPAIILLILVFNNCKYNFKKAPSNFVLN-----CQPWGSIV-DLPPPRW 273


>U50301-2|AAM29675.1|  362|Caenorhabditis elegans Hypothetical
           protein F20D6.5 protein.
          Length = 362

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 355 ERRSSDEYGRRARVELRSASWHRGLQELWRLFAVVV 462
           E+     Y  RA V+ +S +W    Q+L RLF   +
Sbjct: 244 EKHCDGSYKFRAIVDFQSVNWGNAAQDLSRLFVTAM 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,136,276
Number of Sequences: 27780
Number of extensions: 188518
Number of successful extensions: 476
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)