Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0456
         (556 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08010.1 68418.m00932 expressed protein condensin subunit SMC...    28   4.8  
At2g29060.1 68415.m03532 scarecrow transcription factor family p...    27   6.4  
At4g28050.1 68417.m04024 senescence-associated protein, putative...    27   8.4  

>At5g08010.1 68418.m00932 expressed protein condensin subunit SMC4,
           Drosophila melanogaster, EMBL:AF186472
          Length = 566

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 100 SIPKFHSSLQDLKQPSLQEPRCLATRV 180
           ++ K  SS +DL    L+ PRCLA+ V
Sbjct: 21  NVSKGKSSSEDLTNVKLESPRCLASNV 47


>At2g29060.1 68415.m03532 scarecrow transcription factor family
           protein 
          Length = 1336

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +1

Query: 310 MRTAMGV*SHAVSVPERRSSDEYGRRARVELRSASWHRGLQELWRLFA 453
           +RT +   + AVS+ +RR++DE    +R+   S+S+  G + L   FA
Sbjct: 318 LRTMLVSCAQAVSINDRRTADEL--LSRIRQHSSSYGDGTERLAHYFA 363


>At4g28050.1 68417.m04024 senescence-associated protein, putative
           similar to senescence-associated protein 5 [Hemerocallis
           hybrid cultivar] gi|3551954|gb|AAC34855
          Length = 263

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 225 TSCCTPCHGCTIAAVRCGS*VISEPPYPNENCD 323
           + CC P + C    V   +   +  PY NE+C+
Sbjct: 170 SGCCKPSNDCNFTYVNPTTWTKTPGPYKNEDCN 202


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,714,968
Number of Sequences: 28952
Number of extensions: 180605
Number of successful extensions: 449
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)