Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0455
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-25... 109 2e-24
11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-23... 109 2e-24
05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880 33 0.29
01_03_0107 - 12613491-12613538,12613906-12614139,12614682-126147... 32 0.38
09_04_0573 + 18636083-18636237,18637842-18638365,18638420-186385... 29 2.7
04_04_0764 - 27889257-27889394,27889472-27890128,27904516-279045... 29 3.5
05_04_0349 + 20492334-20492494,20493245-20493324,20493951-204940... 29 4.7
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 28 8.2
01_06_0211 + 27571069-27571128,27571563-27571706 28 8.2
>12_01_0029 +
248725-248769,248870-249074,250040-250128,250237-250315,
250429-250556,250764-250862,250953-251061,251301-251380,
251464-251691,251768-251833,251970-252086,252538-252735,
252847-252963,253056-253115,253228-253314,253419-253502,
253623-253757,253837-253899,253979-254083,254174-254286,
254374-254626,254715-254851,254970-255248,255352-256354,
256450-256935,257023-257193,257285-257470,257820-257942,
258024-258134,258225-258395
Length = 1708
Score = 109 bits (262), Expect = 2e-24
Identities = 51/95 (53%), Positives = 67/95 (70%)
Frame = +3
Query: 225 YLCSREGW*DAEVVIIDMADPTNPIRRPISADSAIMNPASKVIALKGKAGVEAQKTLQIF 404
Y+C RE VVI+DMA P P+RRPI+ADSA+MNP ++++ALK + Q LQIF
Sbjct: 38 YICVRETSPQNSVVIVDMAMPAQPLRRPITADSALMNPNTRILALKAQIPGTTQDHLQIF 97
Query: 405 NIEMKSKMKAHTMTEDIVFWKWISLNTLALVTKMS 509
NIE K+K+K+H M E +VFWKWI+ L LVT+ S
Sbjct: 98 NIEAKTKIKSHQMPEQVVFWKWITPKLLGLVTQTS 132
Score = 75.4 bits (177), Expect = 4e-14
Identities = 31/48 (64%), Positives = 40/48 (83%)
Frame = +2
Query: 500 QDVVYHWSMEGDSTPVKMFDRHSSLADCQIINYRTDPKQQWLLLVGIS 643
Q VYHWS+EGDS P KMFDR ++LA+ QIINYR DP ++WL+L+GI+
Sbjct: 130 QTSVYHWSIEGDSEPAKMFDRTANLANNQIINYRCDPSEKWLVLIGIA 177
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/37 (54%), Positives = 28/37 (75%)
Frame = +1
Query: 130 PIRFQEHLQLTNVGINPASISFNTLTMESDKFICVRE 240
PI +E L LT++GI P ++F +TMES+K+ICVRE
Sbjct: 7 PIAMREALTLTSLGIAPQFVTFTHVTMESEKYICVRE 43
>11_01_0030 +
233285-233329,233439-233643,234637-234725,234834-234912,
235048-235175,235383-235481,235572-235680,235920-235999,
236083-236310,236387-236452,236589-236705,237142-237339,
237451-237567,237660-237719,237832-237918,238023-238106,
238233-238367,238446-238508,238588-238692,238781-238893,
238981-239233,239322-239458,239577-239855,239958-240960,
241054-241539,241627-241797,241890-242075,242426-242548,
242630-242740,242834-243004
Length = 1708
Score = 109 bits (262), Expect = 2e-24
Identities = 51/95 (53%), Positives = 67/95 (70%)
Frame = +3
Query: 225 YLCSREGW*DAEVVIIDMADPTNPIRRPISADSAIMNPASKVIALKGKAGVEAQKTLQIF 404
Y+C RE VVI+DMA P P+RRPI+ADSA+MNP ++++ALK + Q LQIF
Sbjct: 38 YICVRETSPQNSVVIVDMAMPAQPLRRPITADSALMNPNTRILALKAQIPGTTQDHLQIF 97
Query: 405 NIEMKSKMKAHTMTEDIVFWKWISLNTLALVTKMS 509
NIE K+K+K+H M E +VFWKWI+ L LVT+ S
Sbjct: 98 NIEAKTKIKSHQMPEQVVFWKWITPKLLGLVTQTS 132
Score = 75.4 bits (177), Expect = 4e-14
Identities = 31/48 (64%), Positives = 40/48 (83%)
Frame = +2
Query: 500 QDVVYHWSMEGDSTPVKMFDRHSSLADCQIINYRTDPKQQWLLLVGIS 643
Q VYHWS+EGDS P KMFDR ++LA+ QIINYR DP ++WL+L+GI+
Sbjct: 130 QTSVYHWSIEGDSEPAKMFDRTANLANNQIINYRCDPSEKWLVLIGIA 177
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/37 (54%), Positives = 28/37 (75%)
Frame = +1
Query: 130 PIRFQEHLQLTNVGINPASISFNTLTMESDKFICVRE 240
PI +E L LT++GI P ++F +TMES+K+ICVRE
Sbjct: 7 PIAMREALTLTSLGIAPQFVTFTHVTMESEKYICVRE 43
>05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880
Length = 898
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -1
Query: 371 SFAFQSNDFTSWIHDSRVCTDWSSNWICWICHINNDNFCVSPTFS 237
SF F ++ W++D V T WS + C ++DN C P+F+
Sbjct: 394 SFKFLVDNLAIWLNDGVVLTGWSGITVSIHCG-DDDNSCAFPSFT 437
>01_03_0107 -
12613491-12613538,12613906-12614139,12614682-12614713,
12616021-12616176,12617972-12618159,12618242-12618324,
12618821-12618976,12620320-12621162,12621197-12621550,
12621962-12623125
Length = 1085
Score = 32.3 bits (70), Expect = 0.38
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 410 DVEDLKCFLSFNTSFAFQSNDFTSWIHDSRVCTDWSSNWIC 288
D E F+ FN+SF + DF +S CTD + +IC
Sbjct: 340 DFEGHALFIGFNSSFFLREEDFPMLTPNSVYCTDDTVTYIC 380
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 410 DVEDLKCFLSFNTSFAFQSNDFTSWIHDSRVCTDWSSNWI 291
D + F+ FN+SF + DF +S CTD S +I
Sbjct: 705 DFDGRALFIGFNSSFFLRVEDFPMLAPNSVYCTDDSMEYI 744
>09_04_0573 +
18636083-18636237,18637842-18638365,18638420-18638529,
18638639-18638677,18638724-18638764,18638862-18638960,
18639405-18639576
Length = 379
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = -1
Query: 377 NTSFAFQSNDFTSWIHDSRVCTDWSSNWICWICHINNDNFCVSPTFSRTQINLSD--SMV 204
NT + TS+ H +VCTD+S C +C + D+ F + SD MV
Sbjct: 200 NTDSPQTTESSTSYAHGKKVCTDYSVT-ACIVCSLVFDSHGNPQAFLEMEGACSDLWLMV 258
Query: 203 RVLKEI 186
VL +I
Sbjct: 259 HVLGQI 264
>04_04_0764 -
27889257-27889394,27889472-27890128,27904516-27904572,
27904935-27905032,27905047-27905113
Length = 338
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 333 NPASKVIALKGKAGVEAQKTLQ 398
NPA KV+A+ AG+E+QK L+
Sbjct: 213 NPAEKVVAVPMTAGIESQKLLK 234
>05_04_0349 +
20492334-20492494,20493245-20493324,20493951-20494020,
20494089-20494139,20494535-20494649,20495401-20496268,
20496453-20496628,20500217-20500276,20501617-20501694,
20501951-20502008,20502658-20502720,20503397-20503453,
20503599-20503661,20504081-20504454
Length = 757
Score = 28.7 bits (61), Expect = 4.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 458 FLEVDFTEHTRSGHQDVVYHW 520
F++ +F E RS H D++ HW
Sbjct: 534 FIQAEFEEKARSMHADIMSHW 554
>11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +3
Query: 342 SKVIALKGKAGVEAQKTLQIFNIEMKSKMKAHTMTEDIVFWKWISLNTLALVTKMSC 512
S+ + L G E K + NIE KS ++ T D WK +++ V K+ C
Sbjct: 1337 SESVLLGGLTEAENLKLIAGPNIEYKSMVELETEENDNPLWKPAAISEHLKVVKVHC 1393
>01_06_0211 + 27571069-27571128,27571563-27571706
Length = 67
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 125 YYRYGFKNIYSLPMWE 172
Y+ YG+ NI+ L MWE
Sbjct: 7 YHTYGYNNIFILDMWE 22
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,177,721
Number of Sequences: 37544
Number of extensions: 419218
Number of successful extensions: 1107
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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