Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0455
(698 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18599| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 4e-08
SB_53069| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_11564| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_21737| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_35858| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_3713| Best HMM Match : Lectin_C (HMM E-Value=6.6e-10) 29 3.6
SB_38670| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_12474| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_16098| Best HMM Match : Abhydrolase_1 (HMM E-Value=4.5e-22) 29 4.8
SB_21450| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_13883| Best HMM Match : 7tm_1 (HMM E-Value=6e-08) 28 6.3
SB_11732| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_25734| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_10757| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_4492| Best HMM Match : PPI_Ypi1 (HMM E-Value=3.8) 28 6.3
>SB_18599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1501
Score = 55.6 bits (128), Expect = 4e-08
Identities = 28/42 (66%), Positives = 33/42 (78%), Gaps = 1/42 (2%)
Frame = +3
Query: 225 YLCSREGW*D-AEVVIIDMADPTNPIRRPISADSAIMNPASK 347
++C RE + A+VVIID+AD NP RRPISADSAIMNP SK
Sbjct: 6 FICVREKVGETAQVVIIDLADANNPTRRPISADSAIMNPKSK 47
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +1
Query: 208 MESDKFICVREKVGET 255
MESDKFICVREKVGET
Sbjct: 1 MESDKFICVREKVGET 16
Score = 36.3 bits (80), Expect = 0.024
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +3
Query: 645 AQQNRVVGAMQLYSVERK 698
++QNRVVGAMQLYSVERK
Sbjct: 46 SKQNRVVGAMQLYSVERK 63
>SB_53069| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = -1
Query: 404 EDLKCFLSFNTSFAFQSNDF---TSWIHDSRVCT 312
ED +C F+ F S D +W+H+ RVCT
Sbjct: 45 EDRRCLQHFHVMFTTLSRDVYNTVTWLHNKRVCT 78
>SB_11564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 306
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -3
Query: 588 IWQSASDECLSNIFTGVESPSIDQWYTTSW*P-ERVCSVKSTSRKQCLRSWCAPSFWI 418
IWQS + SN F ES I Q +TT+ + SV +C + +P+F++
Sbjct: 47 IWQSVTHHISSNFFLDPESVEIWQCHTTALLTFSSILSVGMWKLAECCTIYISPNFFL 104
>SB_21737| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 72
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 504 SW*PERVCSVKSTSRKQCLRSWCAPSFWISSR 409
+W R C + +R+Q +R WC SF++S R
Sbjct: 13 AWKSSRECQICGENRQQ-VRKWCWSSFYLSRR 43
>SB_35858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 708
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +3
Query: 513 TTGRWKATRHP*RCSTGIRRLPIARSLTTGRIRSNSGYC 629
T G WK +H C+T IR+L ++ LTT I S G+C
Sbjct: 181 TNGEWKLPKHILLCTT-IRQLYRSKQLTT--IISRLGHC 216
>SB_3713| Best HMM Match : Lectin_C (HMM E-Value=6.6e-10)
Length = 202
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Frame = -3
Query: 621 HCCFGSVL*LMIWQSASDEC------LSNIFTGVESPSIDQWYTTSW 499
+ C+G L W A D C L++I TG ES + TSW
Sbjct: 111 NACYGLTLDKKTWPDARDSCRAQGAELASIHTGWESALVTSLLVTSW 157
>SB_38670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 405 NIEMKSKMKAHTMTEDIVFWKWISLNTLALVTKMSCTTGRWKATRHP 545
+++++ + +T+T+ V KW L +VTK S T R T+ P
Sbjct: 42 SVKVEHTLVENTLTKRSVLTKWSVLTKRPVVTKQSVVTQRSVLTKRP 88
>SB_12474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1393
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +3
Query: 513 TTGRWKATRHP*RCSTGIRRLPIARSLTTGRIRSNSGYC 629
T G WK +H C+T IR+L ++ LTT I S G+C
Sbjct: 389 TNGEWKLPKHILLCTT-IRQLYRSKQLTT--IISRLGHC 424
>SB_16098| Best HMM Match : Abhydrolase_1 (HMM E-Value=4.5e-22)
Length = 863
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +2
Query: 368 SWC*SSKNTSNLQHRDEIQNEGAHHDRRHCFLEVDFTEHTRSGHQDVVYHWSMEGDSTPV 547
SWC +S + +++ AH++R++ H GH+ H++ D TPV
Sbjct: 527 SWCPTSDRLLEIAEARILKHLKAHYERKYV--------HVDKGHKIWTLHFNPNADKTPV 578
Query: 548 KM 553
M
Sbjct: 579 VM 580
>SB_21450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 395 SNLQHRDEIQNEGAHHDRRHCFLEVDFTEHTRSGHQD 505
SN +H D ++ H + H E D +EH S H D
Sbjct: 3 SNSEHDDSEHDDSEHDNSEHDNSEHDDSEHDDSEHDD 39
>SB_13883| Best HMM Match : 7tm_1 (HMM E-Value=6e-08)
Length = 535
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = -1
Query: 224 NLSDSMVRVLKEIEAGLIPTLVSCKCS*NRIGNTCAMFIDHSVLHKPKTKKRATLLKSRT 45
N++ M + KEI G+IPTL C I F +H +H +T+ + ++RT
Sbjct: 454 NITKGMSPIAKEIITGVIPTL--CFSLNALINPLLYAFRNHKFMHSLQTRLQLCRKRTRT 511
>SB_11732| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1383
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = -1
Query: 194 KEIEAGLIPTLVSCKCS*NRIGNTCAMFIDHSVLHKPKTKKRATLLKS 51
+ +EAGLI T++ I NTC + I H++L ++ +T LK+
Sbjct: 1026 RSVEAGLIKTVLKLVDGAEPIQNTC-LSILHNILDYDNDREYSTALKN 1072
>SB_25734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1938
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/74 (27%), Positives = 36/74 (48%)
Frame = -1
Query: 293 ICWICHINNDNFCVSPTFSRTQINLSDSMVRVLKEIEAGLIPTLVSCKCS*NRIGNTCAM 114
+C + H++ + C+ P + + ++L D + + G P LV C R G CA+
Sbjct: 1823 VCHLHHVSWPDKCI-PELACSVLDLLDEAQT--SQQQCGNAPVLVQCSNGVGRSGTFCAI 1879
Query: 113 FIDHSVLHKPKTKK 72
SVL + KT++
Sbjct: 1880 ---SSVLERLKTEQ 1890
>SB_10757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 369
Score = 28.3 bits (60), Expect = 6.3
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -1
Query: 335 IHDSRVCTDWSSNWICWICH 276
IHDS++ DW +++I W+ +
Sbjct: 158 IHDSKLLVDWFASFILWVIY 177
>SB_4492| Best HMM Match : PPI_Ypi1 (HMM E-Value=3.8)
Length = 276
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -1
Query: 419 FHLDVEDLKCFLSFNTSFAFQSND---FTSWIHDSRVCTDWSSNWICW 285
FHL ++ K + SF+TS + S D F +I+ CT + W
Sbjct: 192 FHLHIDSSKTYCSFSTSDSVSSEDNFGFYKYINSDFSCTATEDSTTQW 239
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,408,539
Number of Sequences: 59808
Number of extensions: 484920
Number of successful extensions: 1276
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1272
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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