Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0455
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr...   117   7e-27
U40951-4|AAG01568.1|  756|Caenorhabditis elegans Temporarily ass...    31   0.60 
AF016671-2|AAB66113.1|  168|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z36949-1|CAA85415.1|  430|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U40270-1|AAC46954.1|  430|Caenorhabditis elegans ceOrc2p protein.      28   5.6  
U39849-9|AAA81051.1|  180|Caenorhabditis elegans Skp1 related (u...    28   5.6  
AF440517-1|AAL34105.1|  180|Caenorhabditis elegans SKR-17 protein.     28   5.6  
AC006808-1|AAF60813.1|  486|Caenorhabditis elegans Hypothetical ...    28   5.6  
U23514-6|AAC46544.2|  816|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin...    27   9.8  

>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical
           protein T20G5.1 protein.
          Length = 1681

 Score =  117 bits (282), Expect = 7e-27
 Identities = 68/150 (45%), Positives = 95/150 (63%), Gaps = 3/150 (2%)
 Frame = +3

Query: 258 EVVIIDMADPTNPIRRPISADSAIMNPASKVIALKGKAGVEAQKTLQIFNIEMKSKMKAH 437
           +VVIID+AD  NP RRPISADS IM+P +K++ALK      + KTLQIFNIE+K+K+KAH
Sbjct: 47  QVVIIDLADTANPTRRPISADSVIMHPTAKILALK------SGKTLQIFNIELKAKVKAH 100

Query: 438 TMTEDIVFWKWISLNTLALVTKMSCTTGRWKATRHP*RCSTGIRRLPIARSLTTGRIRSN 617
              ED+V+WKWIS  T+ALV+  +      +    P +     + L   + +     R++
Sbjct: 101 QNVEDVVYWKWISEKTIALVSDTAVYHWSIEGDAAPVKMFDRHQSLAGTQII---NYRAD 157

Query: 618 SGYCWSVFL---AQQNRVVGAMQLYSVERK 698
           +   W V +   A+ +RVVG+MQLYS ERK
Sbjct: 158 AENKWLVLIGISAKDSRVVGSMQLYSTERK 187



 Score = 78.2 bits (184), Expect = 5e-15
 Identities = 32/45 (71%), Positives = 38/45 (84%)
 Frame = +2

Query: 509 VYHWSMEGDSTPVKMFDRHSSLADCQIINYRTDPKQQWLLLVGIS 643
           VYHWS+EGD+ PVKMFDRH SLA  QIINYR D + +WL+L+GIS
Sbjct: 125 VYHWSIEGDAAPVKMFDRHQSLAGTQIINYRADAENKWLVLIGIS 169



 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 25/42 (59%), Positives = 32/42 (76%)
 Frame = +1

Query: 127 LPIRFQEHLQLTNVGINPASISFNTLTMESDKFICVREKVGE 252
           LPI+F EHLQL N GI   +I+F+ +TMESDK I VRE +G+
Sbjct: 3   LPIKFHEHLQLPNAGIRVPNITFSNVTMESDKNIVVREMIGD 44


>U40951-4|AAG01568.1|  756|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 130 protein.
          Length = 756

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +3

Query: 342 SKVIALKGKAGVEAQKTLQIFNIEMKSKMKAHTMTEDIVFWKWISLNTLALVTKMSCTTG 521
           S+++++K     +    ++ FN+ ++S MK    T  IVFW  I L    +V       G
Sbjct: 236 SEILSIKPNKPTKFPLRMKSFNVTIESSMKIFDYTIPIVFWACILLLVTIVVFVYHYFDG 295

Query: 522 RWK 530
            W+
Sbjct: 296 IWE 298


>AF016671-2|AAB66113.1|  168|Caenorhabditis elegans Hypothetical
           protein W09G10.5 protein.
          Length = 168

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +3

Query: 552 CSTGIRRLPIARSLTTG---RIRSNSGYCWSVFLAQQNR 659
           CS  + R+P+A++  TG    +RS  G+C  VF    N+
Sbjct: 12  CSAVLARVPVAKNCPTGWTWFLRSRGGWCMKVFTEALNQ 50


>Z36949-1|CAA85415.1|  430|Caenorhabditis elegans Hypothetical
           protein F59E10.1 protein.
          Length = 430

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +3

Query: 396 QIFNIEMKSKMKAHTMTEDIVFWKWISLNTLAL 494
           ++  ++ +S   +HTM+   VFWK +++N+  L
Sbjct: 311 RLLGLDARSNQSSHTMSSLDVFWKSLAVNSQKL 343


>U40270-1|AAC46954.1|  430|Caenorhabditis elegans ceOrc2p protein.
          Length = 430

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +3

Query: 396 QIFNIEMKSKMKAHTMTEDIVFWKWISLNTLAL 494
           ++  ++ +S   +HTM+   VFWK +++N+  L
Sbjct: 311 RLLGLDARSNQSSHTMSSLDVFWKSLAVNSQKL 343


>U39849-9|AAA81051.1|  180|Caenorhabditis elegans Skp1 related
           (ubiquitin ligasecomplex component) protein 17 protein.
          Length = 180

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -1

Query: 551 SLRVSSRLPSTSGTRHLG-DQSECVQ*NPLPENNVFGHGVRL 429
           +L +SS L +T   R LG D+  C +  P+P NNV G  ++L
Sbjct: 41  ALLLSSTLAAT--IRELGYDKEYCAELKPVPVNNVVGFTLKL 80


>AF440517-1|AAL34105.1|  180|Caenorhabditis elegans SKR-17 protein.
          Length = 180

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -1

Query: 551 SLRVSSRLPSTSGTRHLG-DQSECVQ*NPLPENNVFGHGVRL 429
           +L +SS L +T   R LG D+  C +  P+P NNV G  ++L
Sbjct: 41  ALLLSSTLAAT--IRELGYDKEYCAELKPVPVNNVVGFTLKL 80


>AC006808-1|AAF60813.1|  486|Caenorhabditis elegans Hypothetical
           protein Y58G8A.1 protein.
          Length = 486

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = -1

Query: 350 DFTSWIHDSRVCTDWSSNWICWICHINNDNFCVSPTFSRTQINLS 216
           DFT+W +D + C    ++W+  +  +N  +   +  + +  I LS
Sbjct: 155 DFTNWPYDQQSCPIVITDWVYGLGQVNLSDPATAAGYGKPTIRLS 199


>U23514-6|AAC46544.2|  816|Caenorhabditis elegans Hypothetical
           protein F48E8.4 protein.
          Length = 816

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -1

Query: 425 FGFHLDV-EDLKCFLSFNTS-FAFQSNDFTSWIHDSRVCTDWSSNWICW 285
           F FH+++  D+  F    T  F  +  DFT W +D  +   +  ++I W
Sbjct: 615 FIFHMNLARDMSRFARLMTEVFVVKIQDFTKWRNDKPIAERFVEDFIVW 663


>AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin
           related protein 2 protein.
          Length = 1335

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 35/148 (23%), Positives = 59/148 (39%), Gaps = 6/148 (4%)
 Frame = +3

Query: 141 SRTFTAYQCGNQSCFYFFQHSHHGIGQVYLCSREGW*DAEVVIIDMADPTNPIRRPISAD 320
           SR  T +    +S FY F+H      Q ++   +   D  V++ ++   T   R  +   
Sbjct: 427 SRILTGHDAAVRSMFYPFEHDTRYDPQYFVSGSD---DFSVIVWNINSGTRIHRFTVHGG 483

Query: 321 --SAIMNPASKVI--ALKGKAGVEAQKTLQIFNI-EMKSKMKAHTMTEDIVFWKWISLNT 485
              + M P S       K  A + A  T+ + NI + K  + A      I+  KW  L+ 
Sbjct: 484 PVKSFMLPPSNCSKQVTKCIASLAADNTIALLNIRDSKCMLLASRHPFPIIQVKWRPLDD 543

Query: 486 LALVTKMSCTTGRWK-ATRHP*RCSTGI 566
             LV     +   W+  T +  R +TG+
Sbjct: 544 FMLVKLADGSVYVWQMETANLDRIATGL 571


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,470,521
Number of Sequences: 27780
Number of extensions: 365194
Number of successful extensions: 1003
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)