Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0455
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g08530.1 68416.m00990 clathrin heavy chain, putative similar ... 109 1e-24
At3g11130.1 68416.m01349 clathrin heavy chain, putative similar ... 107 7e-24
At1g04380.1 68414.m00428 2-oxoglutarate-dependent dioxygenase, p... 31 0.97
At4g19050.1 68417.m02806 mob1/phocein family protein contains Pf... 30 1.7
At2g03200.1 68415.m00273 aspartyl protease family protein contai... 29 2.2
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa... 29 3.0
At4g11655.1 68417.m01863 transmembrane protein, putative contain... 29 3.0
At5g04320.1 68418.m00424 expressed protein 29 3.9
At1g28280.1 68414.m03471 VQ motif-containing protein contains PF... 29 3.9
At4g13920.1 68417.m02154 disease resistance family protein / LRR... 27 9.0
>At3g08530.1 68416.m00990 clathrin heavy chain, putative similar to
Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
sapiens]
Length = 1703
Score = 109 bits (263), Expect = 1e-24
Identities = 53/95 (55%), Positives = 66/95 (69%)
Frame = +3
Query: 225 YLCSREGW*DAEVVIIDMADPTNPIRRPISADSAIMNPASKVIALKGKAGVEAQKTLQIF 404
Y+C RE VVIIDM P P+RRPI+ADSA+MNP SK++ALK + Q LQIF
Sbjct: 38 YICVRETSPQNSVVIIDMNMPMQPLRRPITADSALMNPNSKILALKAQVPGTTQDHLQIF 97
Query: 405 NIEMKSKMKAHTMTEDIVFWKWISLNTLALVTKMS 509
NIE K+K+K+H M E +VFWKWI+ L LVT+ S
Sbjct: 98 NIEAKAKLKSHQMPEQVVFWKWITPKMLGLVTQNS 132
Score = 74.1 bits (174), Expect = 8e-14
Identities = 30/48 (62%), Positives = 41/48 (85%)
Frame = +2
Query: 500 QDVVYHWSMEGDSTPVKMFDRHSSLADCQIINYRTDPKQQWLLLVGIS 643
Q+ VYHWS+EGDS PVKMFDR ++LA+ QIINY+ P ++WL+L+GI+
Sbjct: 130 QNSVYHWSIEGDSEPVKMFDRTANLANNQIINYKCSPNEKWLVLIGIA 177
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/37 (56%), Positives = 27/37 (72%)
Frame = +1
Query: 130 PIRFQEHLQLTNVGINPASISFNTLTMESDKFICVRE 240
PI +E L L ++GIN I+F +TMESDK+ICVRE
Sbjct: 7 PITMKEVLTLPSIGINQQFITFTNVTMESDKYICVRE 43
>At3g11130.1 68416.m01349 clathrin heavy chain, putative similar to
Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
sapiens]
Length = 1705
Score = 107 bits (257), Expect = 7e-24
Identities = 51/95 (53%), Positives = 65/95 (68%)
Frame = +3
Query: 225 YLCSREGW*DAEVVIIDMADPTNPIRRPISADSAIMNPASKVIALKGKAGVEAQKTLQIF 404
Y+C RE VVIIDM P P+RRPI+ADSA+MNP S+++ALK + Q LQIF
Sbjct: 38 YICVRETAPQNSVVIIDMNMPMQPLRRPITADSALMNPNSRILALKAQVPGTTQDHLQIF 97
Query: 405 NIEMKSKMKAHTMTEDIVFWKWISLNTLALVTKMS 509
NIE K+K+K+H M E + FWKWI+ L LVT+ S
Sbjct: 98 NIEAKAKLKSHQMPEQVAFWKWITPKMLGLVTQTS 132
Score = 73.3 bits (172), Expect = 1e-13
Identities = 30/48 (62%), Positives = 40/48 (83%)
Frame = +2
Query: 500 QDVVYHWSMEGDSTPVKMFDRHSSLADCQIINYRTDPKQQWLLLVGIS 643
Q VYHWS+EGDS PVKMFDR ++LA+ QIINY+ P ++WL+L+GI+
Sbjct: 130 QTSVYHWSIEGDSEPVKMFDRTANLANNQIINYKCSPNEKWLVLIGIA 177
Score = 44.4 bits (100), Expect = 7e-05
Identities = 21/37 (56%), Positives = 26/37 (70%)
Frame = +1
Query: 130 PIRFQEHLQLTNVGINPASISFNTLTMESDKFICVRE 240
PI +E L L +VGI I+F +TMESDK+ICVRE
Sbjct: 7 PIIMKEVLTLPSVGIGQQFITFTNVTMESDKYICVRE 43
>At1g04380.1 68414.m00428 2-oxoglutarate-dependent dioxygenase,
putative Strong similarity to Arabidopsis 2A6
(gb|X83096), tomato ethylene synthesis regulatory
protein E8 (SP|P10967)
Length = 345
Score = 30.7 bits (66), Expect = 0.97
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +3
Query: 204 HHGIGQVYLCSREGW*DAEVVIIDMADPTNPIRRPISADSAIMNPASKVIALKG 365
+H ++Y S W D+ V +D DP+NP P++ A++ + V++L G
Sbjct: 118 YHNNFELYSSSAGNWRDSFVCYMD-PDPSNPEDLPVACRDAMIGYSKHVMSLGG 170
>At4g19050.1 68417.m02806 mob1/phocein family protein contains Pfam
PF03637: Mob1/phocein family; contains Pfam F00560:
Leucine Rich Repeats; contains TIGRFAMS profile
TIGR01612: reticulocyte binding protein; hypothetical
protein YIL106w, Saccharomyces cerevisiae, PIR2:S48466
Length = 1405
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +2
Query: 455 CFLEV-DFTEHTRSGH-QDVVYHWSMEGDSTPVKMFDR 562
CF + DF +++ + +D++ HW +EG PVK D+
Sbjct: 300 CFWHILDFYKYSGCAYYRDLIVHWMLEGYFDPVKSVDK 337
>At2g03200.1 68415.m00273 aspartyl protease family protein contains
Pfam domain, PF00026: eukaryotic aspartyl protease
Length = 461
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 99 GVINKHGASITDTVSRTFTAYQCGNQSCFYFFQ 197
G++NK GAS+ V++T + + +Q FY+ +
Sbjct: 276 GIVNKTGASLDGEVTKTMSLLRNPDQPSFYYLE 308
>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 666
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 296 NSTTNQCRLCYHESS**SHCFERQSWC*SSKNTSNLQHRDEIQNEGAHHDRR 451
N+TT R Y SS SH + +W +++S L D + + G+ DR+
Sbjct: 44 NNTTGSGRPTYASSS--SHVVQNHNWWSFGESSSRLGPSDHLNSNGSKTDRQ 93
>At4g11655.1 68417.m01863 transmembrane protein, putative contains 4
transmembrane spanning domains, PMID:11152613
Length = 208
Score = 29.1 bits (62), Expect = 3.0
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = -1
Query: 353 NDFTSWIHDSRVC---TDWSSNWICWICHINNDNFCVSPTFSRTQINLSDSMVRVLKEIE 183
+D+ S+I D +C SS I WI HIN D S +++S S VL
Sbjct: 136 SDYISFIFDQVICYLLVSSSSVAIAWIQHINEDAIKTLRNNSIVSVSMSFSAFLVL--TL 193
Query: 182 AGLIPTLVSCK 150
+GL+ CK
Sbjct: 194 SGLLSGYKLCK 204
>At5g04320.1 68418.m00424 expressed protein
Length = 419
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = -1
Query: 230 QINLSDSMVRVLKEIEAGLIPTL---VSCKCS*NRIGNTCAMFIDHSVLHKPKTKKRATL 60
++ +++++V K +E ++P K S + C F H + HK +KR T
Sbjct: 62 ELGCKNALLKVKKHLEEQVLPRTHHESKDKVSASASDGDCKSFQVHDIKHKDTKRKRTTR 121
Query: 59 LKS 51
+KS
Sbjct: 122 IKS 124
>At1g28280.1 68414.m03471 VQ motif-containing protein contains
PF05678: VQ motif
Length = 247
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/62 (33%), Positives = 28/62 (45%)
Frame = -1
Query: 647 SKKYRPAVTTVASDPSCS**SGNRQATNACRTSLRVSSRLPSTSGTRHLGDQSECVQ*NP 468
S +YR A + S P C + N+C S S P T+ TRH+ +SE NP
Sbjct: 4 SPRYREATNLIPS-PRC------HNSNNSCGMSSSSESNKPPTTPTRHVTTRSE--SGNP 54
Query: 467 LP 462
P
Sbjct: 55 YP 56
>At4g13920.1 68417.m02154 disease resistance family protein / LRR
family protein contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-2.2
[Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
Length = 891
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 140 FKNIYSLPMWESILLLFLSTLSPWNRTS 223
FKN +S+P +S L+L L T + W +
Sbjct: 37 FKNEFSIPSPDSDLMLILQTTAKWRNNT 64
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,511,928
Number of Sequences: 28952
Number of extensions: 339881
Number of successful extensions: 897
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -