Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0447
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...   153   3e-38
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...   153   3e-38
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    36   0.006
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    29   0.70 
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    26   6.6  
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    25   8.7  

>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score =  153 bits (371), Expect = 3e-38
 Identities = 83/136 (61%), Positives = 95/136 (69%)
 Frame = +2

Query: 260 KRFRKAQXPIVEXXTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIIN 439
           KRFRKA+  IVE  TNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV A+  
Sbjct: 58  KRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAA 117

Query: 440 SGPREDSTRIGRAGTVRRQAVDVHPCXESTKQSGLLCTGAREGCIQKY*XNRRVCCR*IN 619
            GPREDSTRIG AGTVRRQAVDV P     +   L+  GARE   +    +   C     
Sbjct: 118 CGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNV-KSISECLAEEI 176

Query: 620 LMQLRGSSNSYAIKKE 667
           +   +GSSNSYAIKK+
Sbjct: 177 INAAKGSSNSYAIKKK 192



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 23/61 (37%), Positives = 37/61 (60%)
 Frame = +3

Query: 78  AGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYH 257
           A S++ + +SL +      IKLF ++    V+V D+SL DYI++     + LPH+AGR+ 
Sbjct: 2   AASIIPKEVSLDETG---HIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQ 56

Query: 258 T 260
           T
Sbjct: 57  T 57


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score =  153 bits (371), Expect = 3e-38
 Identities = 83/136 (61%), Positives = 95/136 (69%)
 Frame = +2

Query: 260 KRFRKAQXPIVEXXTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIIN 439
           KRFRKA+  IVE  TNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV A+  
Sbjct: 58  KRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAA 117

Query: 440 SGPREDSTRIGRAGTVRRQAVDVHPCXESTKQSGLLCTGAREGCIQKY*XNRRVCCR*IN 619
            GPREDSTRIG AGTVRRQAVDV P     +   L+  GARE   +    +   C     
Sbjct: 118 CGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNV-KSISECLAEEI 176

Query: 620 LMQLRGSSNSYAIKKE 667
           +   +GSSNSYAIKK+
Sbjct: 177 INAAKGSSNSYAIKKK 192



 Score = 39.1 bits (87), Expect = 7e-04
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
 Frame = +3

Query: 99  TMSLPQAADIPE---IKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYHT 260
           T SL     + E   IKLF ++    V+V D+SL DYI++     + LPH+AGR+ T
Sbjct: 3   TSSLTPGVSLDENGSIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQT 57


>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 19/39 (48%), Positives = 22/39 (56%)
 Frame = +2

Query: 332 NGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGP 448
           +GKK  A +IV  A  II   TGENP+ VL  AI    P
Sbjct: 136 DGKKAKAEKIVATALSIIQKETGENPIDVLKQAIAEISP 174


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 349 GRTYCQTCV*NYSLVNWRKPSASTRDCHYQLWT 447
           G TYC  C     L+NW K S S   C  +L+T
Sbjct: 101 GHTYCYEC-----LLNWLKESKSCPTCRQKLYT 128


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 114 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGR 251
           + ADI  +  FGR    ++++++  +   I+V+EKYAK  P    R
Sbjct: 7   KVADI-SLAAFGR---KELEIAENEMPGLIAVREKYAKSQPLKGAR 48


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -3

Query: 605 NTLCDCXNISECSPHVHLCTKAQIA 531
           N LC C   S C+P+  + + +++A
Sbjct: 9   NFLCSCRGFSVCTPYASIKSASELA 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,893,718
Number of Sequences: 5004
Number of extensions: 55984
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)