Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0447
(748 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 169 2e-42
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 168 4e-42
01_01_0115 - 856957-858055,858479-858538,858802-859583 29 3.0
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 29 5.2
03_06_0610 + 35052455-35053429,35054936-35055511 29 5.2
06_02_0103 - 11829343-11829699,11831560-11831826,11832239-118325... 28 9.1
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 169 bits (411), Expect = 2e-42
Identities = 89/138 (64%), Positives = 99/138 (71%)
Frame = +2
Query: 254 SHKRFRKAQXPIVEXXTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAI 433
S KRFRKAQ PIVE TNSLMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+V AI
Sbjct: 52 SAKRFRKAQCPIVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAI 111
Query: 434 INSGPREDSTRIGRAGTVRRQAVDVHPCXESTKQSGLLCTGAREGCIQKY*XNRRVCCR* 613
INSGPRED+TRIG AG VRRQAVD+ P + LL TGARE + C
Sbjct: 112 INSGPREDATRIGSAGAVRRQAVDISPLRRVNQAIYLLTTGARESAFRNI-KTIAECLAD 170
Query: 614 INLMQLRGSSNSYAIKKE 667
+ +GSSNSYAIKK+
Sbjct: 171 ELINAAKGSSNSYAIKKK 188
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/42 (64%), Positives = 34/42 (80%), Gaps = 1/42 (2%)
Frame = +3
Query: 132 EIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSAGRY 254
E+KLF RWS DVQV+D+SL DY++V K+A YLPH+AGRY
Sbjct: 10 EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRY 51
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 168 bits (409), Expect = 4e-42
Identities = 88/138 (63%), Positives = 99/138 (71%)
Frame = +2
Query: 254 SHKRFRKAQXPIVEXXTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAI 433
S KRFRKAQ P+VE TNSLMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+V AI
Sbjct: 53 SAKRFRKAQCPLVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAI 112
Query: 434 INSGPREDSTRIGRAGTVRRQAVDVHPCXESTKQSGLLCTGAREGCIQKY*XNRRVCCR* 613
INSGPRED+TRIG AG VRRQAVD+ P + LL TGARE + C
Sbjct: 113 INSGPREDATRIGSAGAVRRQAVDISPLRRVNQAIYLLTTGARESAFRNI-KTIAECLAD 171
Query: 614 INLMQLRGSSNSYAIKKE 667
+ +GSSNSYAIKK+
Sbjct: 172 ELINAAKGSSNSYAIKKK 189
Score = 55.6 bits (128), Expect = 4e-08
Identities = 25/41 (60%), Positives = 32/41 (78%), Gaps = 1/41 (2%)
Frame = +3
Query: 135 IKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRY 254
+KLF WS DVQV+D+SL DY++V K+A YLPH+AGRY
Sbjct: 12 VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRY 52
>01_01_0115 - 856957-858055,858479-858538,858802-859583
Length = 646
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +3
Query: 186 SLQDYISVKEKYAKYLPHSAGRYH 257
+LQ ++SV+ +A +PH+AGR+H
Sbjct: 12 ALQVFVSVQFVFAVLVPHAAGRHH 35
>07_01_0077 +
566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 28.7 bits (61), Expect = 5.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 67 T*PRQAAWLWKPCLYHKPPTF 129
T P Q +WLW+ L H P F
Sbjct: 88 TDPSQCSWLWREVLKHNPDAF 108
>03_06_0610 + 35052455-35053429,35054936-35055511
Length = 516
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = -3
Query: 185 HIRDLHIVATPSAEKLDFR---NVGGLW*RHGFHN-HAACLGYVVIPVLLGHDWYFSITK 18
++ ++V TP A L F GGLW +G + AAC+ V++ V+ DW+ +
Sbjct: 418 NLLSFYLVGTPVAVTLAFGARVGFGGLW--YGLLSAQAACVALVLLAVVWRTDWHLEALR 475
Query: 17 *K 12
K
Sbjct: 476 AK 477
>06_02_0103 -
11829343-11829699,11831560-11831826,11832239-11832559,
11833783-11833844,11835413-11835446,11835539-11835619
Length = 373
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +3
Query: 66 DVAEAGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLP 236
++ G +VV L + +D P+ +L W+ +SDM+L+ IS ++ + Y+P
Sbjct: 215 EIVPGGRMVVSL--LVKRSDKPDTELIQPWTPAVTALSDMALRGVISKEKLDSFYIP 269
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,774,446
Number of Sequences: 37544
Number of extensions: 370283
Number of successful extensions: 818
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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