Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0447
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)               186   2e-47
SB_10618| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)                     29   5.3  
SB_34112| Best HMM Match : RVT_1 (HMM E-Value=0.041)                   28   7.0  
SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14)                 28   9.2  

>SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)
          Length = 272

 Score =  186 bits (452), Expect = 2e-47
 Identities = 95/136 (69%), Positives = 104/136 (76%)
 Frame = +2

Query: 260 KRFRKAQXPIVEXXTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIIN 439
           KRFRKAQ PIVE  TNS+MMHGRNNGKKLM VRI+KH+FEIIHLLTGENPLQVLV AIIN
Sbjct: 127 KRFRKAQCPIVERITNSMMMHGRNNGKKLMTVRIIKHSFEIIHLLTGENPLQVLVNAIIN 186

Query: 440 SGPREDSTRIGRAGTVRRQAVDVHPCXESTKQSGLLCTGAREGCIQKY*XNRRVCCR*IN 619
           SGPREDSTRIGRAGTVRRQAVDV P     +   LLCTGARE   +    +   C     
Sbjct: 187 SGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGARESAFRNI-KSIAECLADEL 245

Query: 620 LMQLRGSSNSYAIKKE 667
           +   +GSSNSYAIKK+
Sbjct: 246 INAAKGSSNSYAIKKK 261



 Score = 79.4 bits (187), Expect = 3e-15
 Identities = 35/56 (62%), Positives = 45/56 (80%)
 Frame = +3

Query: 87  VVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRY 254
           VV +  +   A ++P+IKLFG+WS  DVQVSD+SL DYI+VKEKY+ YLPH+AGRY
Sbjct: 69  VVDDDAAAVVAPEVPDIKLFGKWSTEDVQVSDISLTDYIAVKEKYSTYLPHTAGRY 124



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 19/35 (54%), Positives = 26/35 (74%)
 Frame = +3

Query: 87  VVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSL 191
           VV +  +   A ++P+IKLFG+WS  DVQVSD+SL
Sbjct: 6   VVDDDAAAVVAPEVPDIKLFGKWSTEDVQVSDISL 40


>SB_10618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 434 INSGPREDSTRIGRAGTVRRQA-VDVHPCXE 523
           +N  PRE+S R+ R G V +QA +D+ PC E
Sbjct: 16  VNMVPREES-RVTRLGQVGKQAGLDLQPCAE 45


>SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)
          Length = 439

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 150 RWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYHTSVSVKP 278
           RWSC   Q  + +++ Y+  KE  ++ LP       +SV+  P
Sbjct: 59  RWSCVTYQAKNQAVECYLPGKEPGSRVLPTRQRTRQSSVTYIP 101


>SB_34112| Best HMM Match : RVT_1 (HMM E-Value=0.041)
          Length = 858

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +1

Query: 160 ATMCKSLICLCRTTFPLKRSTQNIYLIQLAGITQAFP*SPXPNRGAXYKLSNDARS 327
           ++MCK  +C+C+    +  S  N   + LA + +  P S   N      + ++ RS
Sbjct: 343 SSMCKHYVCICQNRDNIDSSLANWTDLLLAAVNEHIPKSKPSNVNDYLWIDHELRS 398


>SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14)
          Length = 556

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 126 IPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRY 254
           IPE  L     C DV   +  LQ+++ + +KY  YL + A +Y
Sbjct: 511 IPEEAL--NLECPDVDFRESVLQEFLLLDKKYESYLEYLALKY 551


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,132,266
Number of Sequences: 59808
Number of extensions: 445475
Number of successful extensions: 973
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)