Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0447
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical pr...   177   5e-45
Z66565-5|CAA91482.2|  766|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U64601-3|ABC71817.1|  485|Caenorhabditis elegans Temporarily ass...    28   8.1  
U64601-2|AAQ82847.1|  592|Caenorhabditis elegans Temporarily ass...    28   8.1  
U64601-1|AAB04573.2|  564|Caenorhabditis elegans Temporarily ass...    28   8.1  

>Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical
           protein T05E11.1 protein.
          Length = 210

 Score =  177 bits (432), Expect = 5e-45
 Identities = 92/136 (67%), Positives = 101/136 (74%)
 Frame = +2

Query: 260 KRFRKAQXPIVEXXTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIIN 439
           +RFRKA  PIVE   NSLMMHGRNNGKKLM VRIVKHAFEII+LLTGENP+QVLV A+IN
Sbjct: 65  RRFRKAACPIVERLANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGENPVQVLVNAVIN 124

Query: 440 SGPREDSTRIGRAGTVRRQAVDVHPCXESTKQSGLLCTGAREGCIQKY*XNRRVCCR*IN 619
           SGPREDSTRIGRAGTVRRQAVDV P     +   LLCTGARE   +        C     
Sbjct: 125 SGPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREAAFRNV-KTIAECLADEL 183

Query: 620 LMQLRGSSNSYAIKKE 667
           +   +GSSNSYAIKK+
Sbjct: 184 INAAKGSSNSYAIKKK 199



 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 31/46 (67%), Positives = 36/46 (78%)
 Frame = +3

Query: 117 AADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRY 254
           A + PE+ LFG+WS   V VSD+SL DYI VKEK AKYLPHSAGR+
Sbjct: 17  ATEAPEVALFGKWSLQSVNVSDISLVDYIPVKEKSAKYLPHSAGRF 62


>Z66565-5|CAA91482.2|  766|Caenorhabditis elegans Hypothetical
           protein T04F8.6 protein.
          Length = 766

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 23/68 (33%), Positives = 31/68 (45%)
 Frame = +2

Query: 377 EIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVHPCXESTKQSGLLCTG 556
           EII L +G N  ++L+ A       + S+ +G   T R    DVH   EST +  LL  G
Sbjct: 80  EIIDLASG-NQDELLIAAY------KSSSSLGIKDTQRLTRYDVHTICESTSELDLLSLG 132

Query: 557 AREGCIQK 580
              G   K
Sbjct: 133 DVNGIFDK 140


>U64601-3|ABC71817.1|  485|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 126, isoform c protein.
          Length = 485

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 342 FLPLFRPCIIREFVXXSTIGXWALRKRLCDTCQLNEVNILRTS 214
           +  +FR    RE +   ++G   L  RL  T Q N+ N LRT+
Sbjct: 180 YFKIFRVASEREALMRQSVGTCRLSNRLTKTQQKNQRNNLRTA 222


>U64601-2|AAQ82847.1|  592|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 126, isoform b protein.
          Length = 592

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 342 FLPLFRPCIIREFVXXSTIGXWALRKRLCDTCQLNEVNILRTS 214
           +  +FR    RE +   ++G   L  RL  T Q N+ N LRT+
Sbjct: 287 YFKIFRVASEREALMRQSVGTCRLSNRLTKTQQKNQRNNLRTA 329


>U64601-1|AAB04573.2|  564|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 126, isoform a protein.
          Length = 564

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 342 FLPLFRPCIIREFVXXSTIGXWALRKRLCDTCQLNEVNILRTS 214
           +  +FR    RE +   ++G   L  RL  T Q N+ N LRT+
Sbjct: 259 YFKIFRVASEREALMRQSVGTCRLSNRLTKTQQKNQRNNLRTA 301


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,160,581
Number of Sequences: 27780
Number of extensions: 324769
Number of successful extensions: 745
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)