Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0446
         (459 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875           28   4.2  
11_06_0410 - 23223701-23223714,23223863-23225159,23225314-232262...    27   5.5  
03_02_0811 + 11437654-11438958                                         27   7.3  
03_02_0809 + 11419318-11420493                                         27   7.3  
04_04_0895 - 29168107-29168229,29168617-29170068                       27   9.6  

>02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875
          Length = 356

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 99  SSCSTCKW*CTESRGRSMGRSKNRR 173
           +SC  CK  C  S GRS  R++ RR
Sbjct: 252 TSCIFCKSFCRSSGGRSRARARERR 276


>11_06_0410 -
           23223701-23223714,23223863-23225159,23225314-23226225,
           23226952-23227023,23227323-23227471,23227879-23227912
          Length = 825

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 347 SLFCHL*INKSKLVIQ--STLIHNATYGPS 430
           +LFCH  I KSKL  Q  S    N+T GPS
Sbjct: 758 ALFCHCGIEKSKLWQQQKSANFRNSTPGPS 787


>03_02_0811 + 11437654-11438958
          Length = 434

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +3

Query: 165 NRRCLHTYSYRDRS-KG*YLKVSKFS 239
           N+ C++TYSY D+S    +L+V KF+
Sbjct: 158 NQTCVYTYSYGDKSVTTGFLEVDKFT 183


>03_02_0809 + 11419318-11420493
          Length = 391

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +3

Query: 165 NRRCLHTYSYRDRS-KG*YLKVSKFS 239
           N+ C++TYSY D+S    +L+V KF+
Sbjct: 111 NQTCVYTYSYGDKSVTTGFLEVDKFT 136


>04_04_0895 - 29168107-29168229,29168617-29170068
          Length = 524

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 33  IALNTDGCHRRHPRRYVSEFNISSC 107
           +A   DGC RR+P  Y S+  I +C
Sbjct: 254 LARMQDGCIRRYPALYGSDDRIQAC 278


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,733,122
Number of Sequences: 37544
Number of extensions: 108883
Number of successful extensions: 193
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)