Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0445
(668 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39851-12|AAV58884.1| 137|Caenorhabditis elegans Hypothetical p... 75 6e-14
U39851-11|AAV58883.1| 171|Caenorhabditis elegans Hypothetical p... 75 6e-14
U39851-10|AAM22035.1| 144|Caenorhabditis elegans Hypothetical p... 75 6e-14
AF000264-1|AAC71123.1| 657|Caenorhabditis elegans Heat shock pr... 33 0.24
M28528-1|AAA28076.1| 288|Caenorhabditis elegans protein ( C.ele... 29 2.3
U56965-1|AAB52671.1| 661|Caenorhabditis elegans Heat shock prot... 29 3.9
M26604-1|AAA28074.1| 661|Caenorhabditis elegans protein ( C. el... 29 3.9
AF043693-2|AAB97535.2| 351|Caenorhabditis elegans Hypothetical ... 28 5.2
AF039720-6|AAB96700.1| 347|Caenorhabditis elegans Hypothetical ... 28 5.2
AF067610-1|AAC17538.2| 696|Caenorhabditis elegans Hypothetical ... 28 6.9
Z35663-16|CAA84726.2| 462|Caenorhabditis elegans Hypothetical p... 27 9.1
U70845-3|AAB09101.1| 244|Caenorhabditis elegans Hypothetical pr... 27 9.1
>U39851-12|AAV58884.1| 137|Caenorhabditis elegans Hypothetical
protein C23G10.2c protein.
Length = 137
Score = 74.5 bits (175), Expect = 6e-14
Identities = 40/85 (47%), Positives = 52/85 (61%)
Frame = +2
Query: 254 ITSPEIYQPVGPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLEAG 433
I+S +GPYSQA+ A T+Y+SG LGLD + G QT Q+L NL VL+A
Sbjct: 10 ISSANAPGAIGPYSQAVRAGNTIYLSGSLGLDPKTGDLKEGVVEQTHQSLKNLGEVLKAA 69
Query: 434 GASLESVVKTTVLLASMDDFQTFNK 508
GA +VVKTTVLL ++ DF N+
Sbjct: 70 GADYGNVVKTTVLLQNIADFAAVNE 94
Score = 45.2 bits (102), Expect = 4e-05
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +1
Query: 505 QIYAEYFPKACPARMTYEVSRLPLGAAVEIEGIALCGDL 621
++Y +YF PAR Y+V+ LP G VEIE +A+ G++
Sbjct: 94 EVYGQYFKSPYPARAAYQVAALPKGGLVEIEAVAIAGEI 132
>U39851-11|AAV58883.1| 171|Caenorhabditis elegans Hypothetical
protein C23G10.2a protein.
Length = 171
Score = 74.5 bits (175), Expect = 6e-14
Identities = 40/85 (47%), Positives = 52/85 (61%)
Frame = +2
Query: 254 ITSPEIYQPVGPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLEAG 433
I+S +GPYSQA+ A T+Y+SG LGLD + G QT Q+L NL VL+A
Sbjct: 44 ISSANAPGAIGPYSQAVRAGNTIYLSGSLGLDPKTGDLKEGVVEQTHQSLKNLGEVLKAA 103
Query: 434 GASLESVVKTTVLLASMDDFQTFNK 508
GA +VVKTTVLL ++ DF N+
Sbjct: 104 GADYGNVVKTTVLLQNIADFAAVNE 128
Score = 45.2 bits (102), Expect = 4e-05
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +1
Query: 505 QIYAEYFPKACPARMTYEVSRLPLGAAVEIEGIALCGDL 621
++Y +YF PAR Y+V+ LP G VEIE +A+ G++
Sbjct: 128 EVYGQYFKSPYPARAAYQVAALPKGGLVEIEAVAIAGEI 166
>U39851-10|AAM22035.1| 144|Caenorhabditis elegans Hypothetical
protein C23G10.2b protein.
Length = 144
Score = 74.5 bits (175), Expect = 6e-14
Identities = 40/85 (47%), Positives = 52/85 (61%)
Frame = +2
Query: 254 ITSPEIYQPVGPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLEAG 433
I+S +GPYSQA+ A T+Y+SG LGLD + G QT Q+L NL VL+A
Sbjct: 17 ISSANAPGAIGPYSQAVRAGNTIYLSGSLGLDPKTGDLKEGVVEQTHQSLKNLGEVLKAA 76
Query: 434 GASLESVVKTTVLLASMDDFQTFNK 508
GA +VVKTTVLL ++ DF N+
Sbjct: 77 GADYGNVVKTTVLLQNIADFAAVNE 101
Score = 45.2 bits (102), Expect = 4e-05
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +1
Query: 505 QIYAEYFPKACPARMTYEVSRLPLGAAVEIEGIALCGDL 621
++Y +YF PAR Y+V+ LP G VEIE +A+ G++
Sbjct: 101 EVYGQYFKSPYPARAAYQVAALPKGGLVEIEAVAIAGEI 139
>AF000264-1|AAC71123.1| 657|Caenorhabditis elegans Heat shock
protein protein 4 protein.
Length = 657
Score = 32.7 bits (71), Expect = 0.24
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 472 VG*HGRLPNFQQIYAEYFPKACPARMTYEVSRLPLGAAVE---IEGIALCGDLVIAEXGP 642
VG R+P QQ+ +YF P+R + GAAV+ I G+ GD+V+ + P
Sbjct: 364 VGGSTRIPKVQQLIKDYFNGKEPSRGINPDEAVAYGAAVQAGVIGGVENTGDVVLLDVNP 423
Query: 643 WPL 651
L
Sbjct: 424 LTL 426
>M28528-1|AAA28076.1| 288|Caenorhabditis elegans protein (
C.elegans heat shockprotein 4 gene, 3' end. ).
Length = 288
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +1
Query: 490 LPNFQQIYAEYFPKACPARMTYEVSRLPLGAAVE---IEGIALCGDLVIAEXGPWPL 651
+P QQ+ +YF P+R + GAAV+ I G+ GD+V+ + P L
Sbjct: 1 IPKVQQLIKDYFNGKEPSRGINPDEAVAYGAAVQAGVIGGVENTGDVVLLDVNPLTL 57
>U56965-1|AAB52671.1| 661|Caenorhabditis elegans Heat shock protein
protein 3 protein.
Length = 661
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +1
Query: 472 VG*HGRLPNFQQIYAEYFPKACPARMTYEVSRLPLGAAVE---IEGIALCGDLVIAEXGP 642
VG R+P QQ+ E+F P+R + GAAV+ I G G++V+ + P
Sbjct: 367 VGGSTRIPKVQQLIKEFFNGKEPSRGINPDEAVAYGAAVQGGVISGEEDTGEIVLLDVNP 426
>M26604-1|AAA28074.1| 661|Caenorhabditis elegans protein ( C.
elegans BiP (hsp3)gene, complete cds. ).
Length = 661
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +1
Query: 472 VG*HGRLPNFQQIYAEYFPKACPARMTYEVSRLPLGAAVE---IEGIALCGDLVIAEXGP 642
VG R+P QQ+ E+F P+R + GAAV+ I G G++V+ + P
Sbjct: 367 VGGSTRIPKVQQLIKEFFNGKEPSRGINPDEAVAYGAAVQGGVISGEEDTGEIVLLDVNP 426
>AF043693-2|AAB97535.2| 351|Caenorhabditis elegans Hypothetical
protein C34B2.3 protein.
Length = 351
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 95 TDSVIFLSFELLTYLHLKNKNELRRFC 175
T+++ L FEL L ++ KN+ ++FC
Sbjct: 78 TEAIKMLQFELFVLLTVEKKNQCKQFC 104
>AF039720-6|AAB96700.1| 347|Caenorhabditis elegans Hypothetical
protein F33D11.7 protein.
Length = 347
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 95 TDSVIFLSFELLTYLHLKNKNELRRFC 175
T+++ L FEL L ++ KN+ ++FC
Sbjct: 77 TEAIKMLQFELFVLLTVEKKNQCKQFC 103
>AF067610-1|AAC17538.2| 696|Caenorhabditis elegans Hypothetical
protein F41A4.1 protein.
Length = 696
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 297 KQF*RTRPYTFLEFSDWIEMHRWSAVVLKRRPVRLWT 407
KQF P + EF+D E H +V+K P LWT
Sbjct: 592 KQFDFPAPKSDFEFNDNGEFHEGDVIVVKHSP-NLWT 627
>Z35663-16|CAA84726.2| 462|Caenorhabditis elegans Hypothetical
protein T04A8.3 protein.
Length = 462
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 258 VILFLLLYCYSNFLLNSFWAKLCLRTPVQNLLSSFLFFR 142
+ + L L CY+N ++ W+ +R V N SSFL R
Sbjct: 5 IFMGLCLLCYTNAQVDRDWSFQQIRWKVTNARSSFLRHR 43
>U70845-3|AAB09101.1| 244|Caenorhabditis elegans Hypothetical
protein F22H10.4 protein.
Length = 244
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 495 KLSTNLCRIFS*SLPCSNDIRSQSTTVGSSCG 590
++S +IF +PC+ DI + T G SCG
Sbjct: 143 QVSVMFGQIFERQIPCTVDINYEQQTDGYSCG 174
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,236,351
Number of Sequences: 27780
Number of extensions: 328518
Number of successful extensions: 1005
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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