Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0445
         (668 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20390.1 68416.m02583 endoribonuclease L-PSP family protein c...    75   4e-14
At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein c...    42   3e-04
At4g04920.1 68417.m00715 expressed protein                             28   6.5  

>At3g20390.1 68416.m02583 endoribonuclease L-PSP family protein
           contains Pfam domain PF01042: Endoribonuclease L-PSP
          Length = 187

 Score = 74.9 bits (176), Expect = 4e-14
 Identities = 38/95 (40%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
 Frame = +2

Query: 245 KNNITSPEIYQPVGPYSQAILADKTLYISGILGL-DRDAQMVCGGAEAQTRQALDNLRHV 421
           K  +++ +    +GPYSQAI A+  +++SG+LGL     + V    E QT Q L N+  +
Sbjct: 64  KEVVSTEKAPAALGPYSQAIKANNLVFLSGVLGLIPETGKFVSESVEDQTEQVLKNMGEI 123

Query: 422 LEAGGASLESVVKTTVLLASMDDFQTFNKSMQNIF 526
           L+A GA   SVVKTT++LA + DF+T N+     F
Sbjct: 124 LKASGADYSSVVKTTIMLADLADFKTVNEIYAKYF 158



 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 21/34 (61%), Positives = 26/34 (76%)
 Frame = +1

Query: 505 QIYAEYFPKACPARMTYEVSRLPLGAAVEIEGIA 606
           +IYA+YFP   PAR TY+V+ LPL A +EIE IA
Sbjct: 152 EIYAKYFPAPSPARSTYQVAALPLNAKIEIECIA 185


>At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein
           contains Pfam domain PF01902: Domain of unknown function
          Length = 715

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +2

Query: 281 VGPYSQAILADKTLYISGILGLDRDA-QMVCGGAEAQTRQALDNLRHVLEAGGASLESVV 457
           +GPYSQA L    L+++G LGLD     +   GA A+  QAL N   + E+   S+ S  
Sbjct: 425 IGPYSQATLHQSVLHMAGQLGLDPPTMNLQTEGAIAELNQALTNSEAIAESFNCSISSSA 484

Query: 458 KTTVLLASMDDFQTFNKSMQNIFL 529
              V+  S    Q+    +   F+
Sbjct: 485 ILFVVFCSARTKQSERNQLHEKFV 508


>At4g04920.1 68417.m00715 expressed protein 
          Length = 1250

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 239 SNKNNITSPEIYQPVGPYSQAILADKTLYIS 331
           SN+NN+TSP       P +  +  DK+LY++
Sbjct: 844 SNRNNVTSP-TQNASSPATPQVFPDKSLYLA 873


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,223,829
Number of Sequences: 28952
Number of extensions: 299493
Number of successful extensions: 788
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)