Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0441
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...   143   2e-35
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...   103   3e-23
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        26   3.6  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    25   6.3  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   6.3  

>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score =  143 bits (346), Expect = 2e-35
 Identities = 68/107 (63%), Positives = 78/107 (72%)
 Frame = +2

Query: 257 LTLSEKILYSHLDDPKGQEIERGASYLRLXPDRVAMQDATAQMAMLQFISSGLPRXAVPS 436
           LT SEKILY HLDDP  Q+IERG SYL+L PDRVA QDATAQMA+LQF+S+G+P  AVP 
Sbjct: 59  LTYSEKILYGHLDDPVNQDIERGVSYLKLRPDRVACQDATAQMAILQFMSAGMPEVAVPV 118

Query: 437 TIHCDHLIEAQVGGEKDLARAKDLTKKYTSF*RLLGAKYGXGFWKXG 577
           T+HCDHLIEA  GG  DL RA    K+   F +   AKY  GFW+ G
Sbjct: 119 TVHCDHLIEAYEGGPIDLERANVTNKEVYDFLQTACAKYNIGFWRPG 165



 Score = 37.5 bits (83), Expect = 0.001
 Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
 Frame = +3

Query: 105 VLSEIQQRCFSVSPLTAA--AAQVAMSKFDKVP-LXYEKLTKNLEVVXKRLGR 254
           + ++   R FS +P+ A   A +VAMS F+K   + Y+++  NLE+V KRL R
Sbjct: 5   IFTQSTLRSFSCAPVAANIDAKKVAMSNFEKNKFINYQRIKDNLEIVKKRLNR 57


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score =  103 bits (246), Expect = 3e-23
 Identities = 53/114 (46%), Positives = 71/114 (62%), Gaps = 6/114 (5%)
 Frame = +2

Query: 254 KLTLSEKILYSHLDDPK------GQEIERGASYLRLXPDRVAMQDATAQMAMLQFISSGL 415
           KLTL+EK+LYSHL +P+           RG+ YL+L PDRVAMQDA+AQMA+LQF++ GL
Sbjct: 56  KLTLAEKVLYSHLVNPEESFSGVSPSDIRGSLYLKLNPDRVAMQDASAQMALLQFMTCGL 115

Query: 416 PRXAVPSTIHCDHLIEAQVGGEKDLARAKDLTKKYTSF*RLLGAKYGXGFWKXG 577
            +  +P++IHCDHLI    G   D+  +    K+   F +    KYG  FW  G
Sbjct: 116 EKTMIPASIHCDHLIVGHRGANSDIPDSIANNKEIFDFLQSAAKKYGIQFWGPG 169


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 101  GGTL*NPTKMFQRISIDRRRGPGGDVQVRQGT 196
            GG++ N  +   ++ ID  R PG ++ V QG+
Sbjct: 1226 GGSIINKIRKIAQVKIDVPRTPGDEIVVVQGS 1257


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 133 KHLCWISESTTLVLLPXPCKTLIQCAMVAXLQYIKRINLEKF 8
           ++ CWIS   TL+LL     T +Q   +  L  I RI    F
Sbjct: 320 QYKCWISRDVTLILL-----TALQLVNIYWLILILRIGYRAF 356


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 535 SLKTCILLCEVLSPGQILLASDLGFDQVITMN 440
           SLK C++ CEV+ P   ++ SD     + T N
Sbjct: 395 SLKLCMVECEVVDPEFNIIVSDRWLQPLGTNN 426


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,308,871
Number of Sequences: 5004
Number of extensions: 43517
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)