Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0441
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52142| Best HMM Match : Recombinase (HMM E-Value=8.2)               76   2e-14
SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_25734| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_17882| Best HMM Match : ShTK (HMM E-Value=1e-05)                    28   6.6  
SB_503| Best HMM Match : Y_phosphatase (HMM E-Value=0)                 28   6.6  
SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)                   27   8.7  
SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18)                     27   8.7  

>SB_52142| Best HMM Match : Recombinase (HMM E-Value=8.2)
          Length = 193

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 34/57 (59%), Positives = 41/57 (71%)
 Frame = +2

Query: 407 SGLPRXAVPSTIHCDHLIEAQVGGEKDLARAKDLTKKYTSF*RLLGAKYGXGFWKXG 577
           S   + AVPSTIHCDHLIEA+ GG +DLA+AKD+ K+  +F     AKYG GFWK G
Sbjct: 102 SSWQKVAVPSTIHCDHLIEAKDGGSQDLAKAKDINKEVYNFLATASAKYGVGFWKPG 158


>SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1788

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 395  VTLPFVQWRLAWPHGRXAGGDNLRRVQFPVLWGHPS 288
            +TLP  +W++A+  G     +N R+V + VL+G  S
Sbjct: 943  LTLPLRRWKIAFRFGAGTSDNNGRKVFYTVLFGQSS 978


>SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2835

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +2

Query: 503  DLTKKYTSF*RL--LGAKYGXGFWKXGLWYY 589
            DLTK+ T   R   L   YG GF++ G WY+
Sbjct: 1568 DLTKQQTLLWRSGDLNISYGLGFYESGCWYW 1598


>SB_25734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1938

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 332  YLRLXPDRVAMQDATAQMAMLQFISSGLPRXAVPSTIHCDHLIE 463
            +  + PD+   Q ATA +A  + + +  PR A P  +HC   +E
Sbjct: 1558 HFTVWPDKGVPQYATAVLAFRRKVRALNPRDAGPVIVHCSAGVE 1601


>SB_17882| Best HMM Match : ShTK (HMM E-Value=1e-05)
          Length = 387

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 190 LSNLDIATWAAAAVNGDTLKH 128
           L N+ IATWA    N +T KH
Sbjct: 142 LRNVAIATWALVLANSNTFKH 162


>SB_503| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 979

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 332 YLRLXPDRVAMQDATAQMAMLQFISSGLPRXAVPSTIHCDHLIE 463
           +  + PD+   Q ATA +A  + + +  PR A P  +HC   +E
Sbjct: 540 HFTVWPDKGVPQYATAVLAFRRKVRALNPRDAGPVIVHCSVGVE 583


>SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)
          Length = 1284

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 418 GKAGRDKL*HCHLCSGVLHG 359
           G AG+DK+  C +CS   HG
Sbjct: 826 GSAGKDKMFFCKVCSEPFHG 845


>SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18)
          Length = 458

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 418 GKAGRDKL*HCHLCSGVLHG 359
           G AG+DK+  C +CS   HG
Sbjct: 167 GSAGKDKMFFCKVCSEPFHG 186


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,712,260
Number of Sequences: 59808
Number of extensions: 350247
Number of successful extensions: 819
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)