Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0441
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25599-7|AAA28050.2|  777|Caenorhabditis elegans Aconitase prote...   176   1e-44
L25599-9|AAN63393.1|  683|Caenorhabditis elegans Aconitase prote...   117   6e-27
L25599-8|AAL65788.1|  665|Caenorhabditis elegans Aconitase prote...    73   2e-13
U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family...    27   7.7  

>L25599-7|AAA28050.2|  777|Caenorhabditis elegans Aconitase protein
           2, isoform a protein.
          Length = 777

 Score =  176 bits (428), Expect = 1e-44
 Identities = 84/107 (78%), Positives = 90/107 (84%)
 Frame = +2

Query: 257 LTLSEKILYSHLDDPKGQEIERGASYLRLXPDRVAMQDATAQMAMLQFISSGLPRXAVPS 436
           LTLSEKILY HLD PK Q+IERG SYLRL PDRVAMQDATAQMAMLQFISSGLP+ AVPS
Sbjct: 60  LTLSEKILYGHLDQPKTQDIERGVSYLRLRPDRVAMQDATAQMAMLQFISSGLPKTAVPS 119

Query: 437 TIHCDHLIEAQVGGEKDLARAKDLTKKYTSF*RLLGAKYGXGFWKXG 577
           TIHCDHLIEAQ GG +DLARAKDL K+  +F    G+KYG GFWK G
Sbjct: 120 TIHCDHLIEAQKGGAQDLARAKDLNKEVFNFLATAGSKYGVGFWKPG 166


>L25599-9|AAN63393.1|  683|Caenorhabditis elegans Aconitase protein
           2, isoform c protein.
          Length = 683

 Score =  117 bits (282), Expect = 6e-27
 Identities = 55/72 (76%), Positives = 60/72 (83%)
 Frame = +2

Query: 362 MQDATAQMAMLQFISSGLPRXAVPSTIHCDHLIEAQVGGEKDLARAKDLTKKYTSF*RLL 541
           MQDATAQMAMLQFISSGLP+ AVPSTIHCDHLIEAQ GG +DLARAKDL K+  +F    
Sbjct: 1   MQDATAQMAMLQFISSGLPKTAVPSTIHCDHLIEAQKGGAQDLARAKDLNKEVFNFLATA 60

Query: 542 GAKYGXGFWKXG 577
           G+KYG GFWK G
Sbjct: 61  GSKYGVGFWKPG 72


>L25599-8|AAL65788.1|  665|Caenorhabditis elegans Aconitase protein
           2, isoform b protein.
          Length = 665

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 35/44 (79%), Positives = 36/44 (81%)
 Frame = +2

Query: 257 LTLSEKILYSHLDDPKGQEIERGASYLRLXPDRVAMQDATAQMA 388
           LTLSEKILY HLD PK Q+IERG SYLRL PDRVAMQDA   MA
Sbjct: 60  LTLSEKILYGHLDQPKTQDIERGVSYLRLRPDRVAMQDAVDVMA 103


>U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family
           protein 5, isoforma protein.
          Length = 1544

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +3

Query: 399 LSLPAFPV*LYRPPFIVIT*SKPKSEARRIWPGLRTSQRSIQVFRDCSELNM 554
           + LP+ P     PP  V T S P    +R+ P  + SQ ++Q+  + S++ +
Sbjct: 670 VELPSLPTTKMAPPQPVPTQSPPLPTPKRLAPVFKPSQITVQIDENESQVEI 721


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,898,646
Number of Sequences: 27780
Number of extensions: 251936
Number of successful extensions: 566
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)