Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0440
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr...    82   6e-17
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa...    29   0.56 
SPCC970.06 |||cargo receptor for soluble proteins |Schizosacchar...    25   5.2  
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    25   5.2  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    25   6.8  
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   9.0  

>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 308

 Score = 81.8 bits (193), Expect = 6e-17
 Identities = 34/82 (41%), Positives = 55/82 (67%)
 Frame = +2

Query: 260 QFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILXAGFKKMGVDKIVPIDKLVKGRFQDNF 439
           Q  D ++   +P+K++ F+ N E++YI N+K+L   F K G+DK+V  ++L + + QDN 
Sbjct: 34  QIFDSIYQ-DIPLKKVNFECNNEYQYINNWKVLQQVFLKKGIDKVVDPERLSRCKMQDNL 92

Query: 440 EFLQWFKKFFDANYGGAAYDAV 505
           EF+QW K+F+D  Y G  YDA+
Sbjct: 93  EFVQWAKRFWDQYYPGGDYDAL 114


>SPBC21C3.18 |spo4||serine/threonine protein kinase
           Spo4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 293 PMKRIKFKTNLEHEYIQNFKILXAGFK 373
           P KR+K KT L+HE+     +  +GF+
Sbjct: 388 PSKRVKAKTALQHEFFNACGVTRSGFE 414


>SPCC970.06 |||cargo receptor for soluble proteins
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 139 TFTAIFTMYQPLMKKFLTV 83
           TF A FT Y PL+ +FL V
Sbjct: 45  TFMAPFTPYMPLLGRFLIV 63


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 327 SKFVLNLILFIGTLPGNSMSMNWQWRHXYTTL 232
           SK + NL   IG  P N +S ++ WR  Y  L
Sbjct: 232 SKVIENLAA-IGYEPNNMLSASYDWRLSYANL 262


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
 Frame = -1

Query: 465 NFLNHCKNSKLSWKRPFTSLSMGTILSTPIFLKPAXNILKFCIYSCSKFVLNLIL----- 301
           ++L   K+ K SWK    SLS  ++ +  + LK      ++   S    +LNL +     
Sbjct: 764 SYLLFSKDEKYSWKTALESLSAKSLSNLLVELKQLDLSKEYSKISDDTSILNLTISKEEA 823

Query: 300 -FIGTLP 283
            F+G  P
Sbjct: 824 SFVGAFP 830


>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 345 FCIYSCSKFVLNLILFIGTLP 283
           F IYSC++ + N  L + TLP
Sbjct: 171 FSIYSCAEKISNTSLLLCTLP 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,327,930
Number of Sequences: 5004
Number of extensions: 49881
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)