Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0440
(522 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1332 + 32718584-32718706,32718892-32718960,32719069-327191... 87 8e-18
10_08_0523 - 18518158-18518442,18518786-18518899,18518994-185192... 84 8e-17
04_03_0659 - 18453778-18453903,18453976-18454963,18455496-184562... 31 0.74
03_03_0050 - 14086954-14087079,14087152-14088045 31 0.74
08_02_1241 - 25511462-25511614,25511690-25512499 29 1.7
08_02_0746 + 20721421-20721649,20722912-20722971,20723318-207233... 29 1.7
03_02_0886 - 12173913-12174065,12174140-12174685 29 1.7
06_01_0503 - 3596664-3596837,3597647-3598069,3598362-3598595,359... 28 4.0
03_05_0226 - 22115285-22115404,22115477-22116661,22117037-221178... 28 4.0
12_01_0518 - 4093206-4094955,4095357-4095810,4095966-4096236,409... 28 5.2
11_01_0669 - 5454116-5454153,5454569-5454770,5454865-5455029,545... 28 5.2
09_01_0117 + 1808669-1809181,1810038-1810059,1810170-1810223,181... 27 6.9
05_03_0384 - 13361999-13362120,13362241-13362252,13362921-133629... 27 6.9
05_03_0383 - 13352924-13353045,13353166-13353177,13353844-133539... 27 6.9
>04_04_1332 +
32718584-32718706,32718892-32718960,32719069-32719155,
32719865-32719971,32720066-32720187,32720462-32720535,
32720833-32720946,32721100-32721213
Length = 269
Score = 87.0 bits (206), Expect = 8e-18
Identities = 38/77 (49%), Positives = 52/77 (67%)
Frame = +2
Query: 257 CQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILXAGFKKMGVDKIVPIDKLVKGRFQDN 436
CQ MDM+ PG VPM ++ F E++ IQN+KIL F K+ + K + ++KLVKGR DN
Sbjct: 49 CQLMDMVHPGVVPMHKVNFDAKTEYDMIQNYKILQDVFNKLRLSKNIEVNKLVKGRPLDN 108
Query: 437 FEFLQWFKKFFDANYGG 487
EFLQW K++ D+ GG
Sbjct: 109 LEFLQWLKRYCDSVNGG 125
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 168 LSRHDMLAWVNDCLQSNFAKIEELCTXA 251
+ R ++L+W+N LQ + AK+EE + A
Sbjct: 19 VGRGEILSWINATLQLSLAKVEEAASGA 46
>10_08_0523 -
18518158-18518442,18518786-18518899,18518994-18519219,
18519364-18519470,18519809-18519964,18520100-18520210
Length = 332
Score = 83.8 bits (198), Expect = 8e-17
Identities = 35/77 (45%), Positives = 50/77 (64%)
Frame = +2
Query: 257 CQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILXAGFKKMGVDKIVPIDKLVKGRFQDN 436
CQ MD PG+VPM ++ F E+E IQN+K+L F K+ + K + ++KL KGR DN
Sbjct: 45 CQLMDAAHPGAVPMHKVNFDAKTEYEMIQNYKVLQDVFNKLKITKHIEVNKLTKGRPLDN 104
Query: 437 FEFLQWFKKFFDANYGG 487
EF+QW K++ D+ GG
Sbjct: 105 LEFMQWMKRYCDSVNGG 121
Score = 30.3 bits (65), Expect = 0.98
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 168 LSRHDMLAWVNDCLQSNFAKIEELCTXA 251
+ R+++LAW+N LQ +K+EE + A
Sbjct: 15 VGRNEILAWINTTLQLGLSKVEEAASGA 42
>04_03_0659 - 18453778-18453903,18453976-18454963,18455496-18456229,
18456292-18456360,18456528-18456605,18456703-18456789,
18456881-18456931,18457021-18457092,18457177-18457304,
18458194-18458275,18458705-18458754,18459043-18459096,
18459586-18459675,18459903-18459983,18460443-18460538,
18460960-18461022,18461313-18461402,18461630-18461698,
18462051-18462291
Length = 1082
Score = 30.7 bits (66), Expect = 0.74
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 239 VYXCRHCQFMDMLFPGSVPMKRIKF 313
VY C HCQ D FP + P+K I+F
Sbjct: 1002 VYHCSHCQRTDHTFP-TCPLKHIEF 1025
>03_03_0050 - 14086954-14087079,14087152-14088045
Length = 339
Score = 30.7 bits (66), Expect = 0.74
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 239 VYXCRHCQFMDMLFPGSVPMKRIKF 313
VY C HCQ D FP + P+K I+F
Sbjct: 259 VYHCSHCQRTDHTFP-TCPLKHIEF 282
>08_02_1241 - 25511462-25511614,25511690-25512499
Length = 320
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 230 RRVVYXCRHCQFMDMLFPGSVPMKRIKF 313
++ +Y C HCQ D FP + P+K ++F
Sbjct: 228 QKELYHCSHCQRTDHTFP-TCPLKHVEF 254
>08_02_0746 +
20721421-20721649,20722912-20722971,20723318-20723377,
20723458-20723553,20723764-20723871,20724037-20724090,
20724275-20724414,20724499-20724570,20724642-20724692,
20724943-20725017,20725205-20725585,20726372-20727604,
20727679-20727831
Length = 903
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 230 RRVVYXCRHCQFMDMLFPGSVPMKRIKF 313
++ +Y C HCQ D FP + P+K ++F
Sbjct: 811 QKELYHCSHCQRTDHTFP-TCPLKHVEF 837
>03_02_0886 - 12173913-12174065,12174140-12174685
Length = 232
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 230 RRVVYXCRHCQFMDMLFPGSVPMKRIKF 313
++ +Y C HCQ D FP + P+K ++F
Sbjct: 140 QKELYHCSHCQRTDHTFP-TCPLKHVEF 166
>06_01_0503 -
3596664-3596837,3597647-3598069,3598362-3598595,
3598720-3598993,3599390-3599523,3599572-3599634,
3599759-3599846,3599919-3599989,3600898-3601010,
3601836-3602004,3602580-3602671,3602819-3603295,
3603736-3604090
Length = 888
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 267 MNWQWRHXYTTLRSSQSLTGDNHSPTLAYHAAIDF 163
+NW RH T LR++ TG + +L H A+D+
Sbjct: 740 VNWD-RHSLTDLRAAVVCTGGHRLASLLRHLALDY 773
>03_05_0226 - 22115285-22115404,22115477-22116661,22117037-22117861,
22118029-22118106,22118370-22118420,22118510-22118581,
22118666-22118667,22119453-22119557,22119668-22119749,
22120178-22120227,22120514-22120567,22121084-22121164,
22121567-22121656,22121884-22121964,22122304-22122544
Length = 1038
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 239 VYXCRHCQFMDMLFPGSVPMKRIKF 313
VY C +CQ D FP + P+K I+F
Sbjct: 960 VYHCSYCQRTDHTFP-TCPLKHIEF 983
>12_01_0518 -
4093206-4094955,4095357-4095810,4095966-4096236,
4096308-4096628
Length = 931
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -1
Query: 507 PTASYAAPP*LASKNFLNHCKNSKLSWKRPFTS-LSMGTILSTP 379
PTA A PP LA L C N+ L+W +S +S T + P
Sbjct: 481 PTAPMA-PPTLAPTKCLTECPNNNLTWATASSSHISEDTATTVP 523
>11_01_0669 -
5454116-5454153,5454569-5454770,5454865-5455029,
5455278-5456183
Length = 436
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +2
Query: 221 CEDRRVVYXCRHCQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILXAGF 370
C+ + V++ C+ F+ L +P+++I K EH + F + GF
Sbjct: 387 CKGKEVMWVCK---FLKTLGTFGIPLEKINIKLTSEHCRSECFNFVCTGF 433
>09_01_0117 +
1808669-1809181,1810038-1810059,1810170-1810223,
1810684-1810892
Length = 265
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -1
Query: 507 PTASYAAPP*LASKNFLN--HCKNSKLSWKRPFTSLSMGTILSTPIF 373
P +S AP LA N++N CK + S R +++ G IL+ PI+
Sbjct: 148 PPSSTGAPS-LARCNYINANKCKLQRSSQIRKVVNITFGGILARPIY 193
>05_03_0384 -
13361999-13362120,13362241-13362252,13362921-13362981,
13363049-13363202,13364653-13364788,13365020-13365290,
13365654-13365962
Length = 354
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -3
Query: 484 SIVGVKEFLEP-LQKLKIILETTLHQFVNGYYLVHTHLFK 368
S++G + P + +LK+ ++ TLH+ + LVH LF+
Sbjct: 151 SLIGTMSGIIPYMNQLKVFVDVTLHRMMLMKLLVHHDLFE 190
>05_03_0383 -
13352924-13353045,13353166-13353177,13353844-13353904,
13353972-13354125,13355576-13355711,13355943-13356138
Length = 226
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -3
Query: 484 SIVGVKEFLEP-LQKLKIILETTLHQFVNGYYLVHTHLFK 368
S++G + P + +LK+ ++ TLH+ + LVH LF+
Sbjct: 23 SLIGTMSGIIPYMNQLKVFVDVTLHRMMLMKLLVHHDLFE 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,501,501
Number of Sequences: 37544
Number of extensions: 294147
Number of successful extensions: 722
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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