Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0440
         (522 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    27   0.15 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   5.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   5.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   5.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   5.8  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            21   5.8  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 19/78 (24%), Positives = 36/78 (46%)
 Frame = -1

Query: 411 SLSMGTILSTPIFLKPAXNILKFCIYSCSKFVLNLILFIGTLPGNSMSMNWQWRHXYTTL 232
           SL +G ++ T  F     +I    I S +   + ++L    LP N +S+ +        +
Sbjct: 418 SLGIGEVI-TVSFTATLASIGAASIPSAALITMLIVLTALGLPTNDISLLFAVDWMLDRI 476

Query: 231 RSSQSLTGDNHSPTLAYH 178
           R+S ++ GD +   + YH
Sbjct: 477 RTSINVLGDGYGAGIVYH 494


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 470 DANYGGAAYDAVGHEKV 520
           D+ Y GAA  AV HE V
Sbjct: 488 DSGYDGAASTAVIHEPV 504


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 270 SMNWQWRHXYTTLRSSQSLTGDN 202
           ++ + W++   TLR S SLT  N
Sbjct: 213 AITYVWKNDEGTLRKSPSLTSLN 235


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 270 SMNWQWRHXYTTLRSSQSLTGDN 202
           ++ + W++   TLR S SLT  N
Sbjct: 213 AITYVWKNDEGTLRKSPSLTSLN 235


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 270 SMNWQWRHXYTTLRSSQSLTGDN 202
           ++ + W++   TLR S SLT  N
Sbjct: 264 AITYVWKNDEGTLRKSPSLTSLN 286


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 270 SMNWQWRHXYTTLRSSQSLTGDN 202
           ++ + W++   TLR S SLT  N
Sbjct: 213 AITYVWKNDEGTLRKSPSLTSLN 235


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 162 ENLSRHDMLAWVNDC 206
           +NL+++ M+ W  DC
Sbjct: 13  KNLNQNQMMIWALDC 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,518
Number of Sequences: 438
Number of extensions: 3348
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)