Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0440
(522 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g67270.1 68418.m08480 microtubule-associated EB1 family prote... 90 1e-18
At5g62500.1 68418.m07844 microtubule-associated EB1 family prote... 87 5e-18
At3g47690.1 68416.m05194 microtubule-associated EB1 family prote... 87 9e-18
At3g19090.1 68416.m02426 RNA-binding protein, putative similar t... 29 1.9
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 28 3.3
At5g39880.1 68418.m04837 expressed protein 28 3.3
At3g52720.2 68416.m05809 carbonic anhydrase family protein low s... 28 4.4
At3g52720.1 68416.m05808 carbonic anhydrase family protein low s... 28 4.4
At1g48800.1 68414.m05461 terpene synthase/cyclase family protein... 27 5.8
>At5g67270.1 68418.m08480 microtubule-associated EB1 family protein
similar to SP|Q9UPY8 Microtubule-associated protein
RP/EB family member 3 (Protein EB3) {Homo sapiens};
contains Pfam profiles PF00307: Calponin homology (CH)
domain, PF03271: EB1 protein
Length = 329
Score = 89.8 bits (213), Expect = 1e-18
Identities = 38/78 (48%), Positives = 52/78 (66%)
Frame = +2
Query: 254 HCQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILXAGFKKMGVDKIVPIDKLVKGRFQD 433
HCQ MD + PG+VPM ++ F E+E IQN+K+L F K+ + K + + KLVKGR D
Sbjct: 43 HCQLMDSVHPGTVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVSKLVKGRPLD 102
Query: 434 NFEFLQWFKKFFDANYGG 487
N EF+QW KK+ D+ GG
Sbjct: 103 NLEFMQWMKKYCDSVNGG 120
Score = 35.9 bits (79), Expect = 0.017
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +3
Query: 168 LSRHDMLAWVNDCLQSNFAKIEELCTXA 251
+ R ++LAW+N LQ N +K+EE C+ A
Sbjct: 14 VGRSEILAWINSTLQLNLSKVEEACSGA 41
>At5g62500.1 68418.m07844 microtubule-associated EB1 family protein
similar to EBF3-S (Microtubule-associated protein) [Homo
sapiens] GI:12751131; contains Pfam profiles PF00307:
Calponin homology (CH) domain, PF03271: EB1 protein
Length = 293
Score = 87.4 bits (207), Expect = 5e-18
Identities = 37/77 (48%), Positives = 53/77 (68%)
Frame = +2
Query: 257 CQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILXAGFKKMGVDKIVPIDKLVKGRFQDN 436
CQ +DM FPG VPM ++ F+ E+E IQN+K++ F K+ + K + +++LVKGR DN
Sbjct: 44 CQMLDMTFPGVVPMHKVNFEAKNEYEMIQNYKVMQEVFTKLKITKPLEVNRLVKGRPLDN 103
Query: 437 FEFLQWFKKFFDANYGG 487
EFLQW K+F D+ GG
Sbjct: 104 LEFLQWLKRFCDSINGG 120
Score = 30.7 bits (66), Expect = 0.62
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 168 LSRHDMLAWVNDCLQSNFAKIEELCTXA 251
+ R+++L+W+ND L N ++IEE + A
Sbjct: 14 VGRNEILSWINDRLHLNLSRIEEAASGA 41
>At3g47690.1 68416.m05194 microtubule-associated EB1 family protein
similar to SP|Q9UPY8 Microtubule-associated protein
RP/EB family member 3 (Protein EB3) {Homo sapiens};
contains Pfam profile PF03271: EB1 protein
Length = 276
Score = 86.6 bits (205), Expect = 9e-18
Identities = 38/77 (49%), Positives = 52/77 (67%)
Frame = +2
Query: 257 CQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILXAGFKKMGVDKIVPIDKLVKGRFQDN 436
CQ +DM FPG VPM ++ F E++ IQN+K+L F K+ + K + I++LVKGR DN
Sbjct: 44 CQMLDMTFPGVVPMHKVNFDAKNEYDMIQNYKVLQDVFNKLKITKPLEINRLVKGRPLDN 103
Query: 437 FEFLQWFKKFFDANYGG 487
EFLQW K+F D+ GG
Sbjct: 104 LEFLQWLKRFCDSINGG 120
Score = 29.9 bits (64), Expect = 1.1
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3
Query: 168 LSRHDMLAWVNDCLQSNFAKIEELCTXA 251
+ R+++L W+ND L N +++EE + A
Sbjct: 14 VGRNEILTWINDRLHLNLSRVEEAASGA 41
>At3g19090.1 68416.m02426 RNA-binding protein, putative similar to
RNA-binding protein homolog GB:AAF00075 GI:6449448 from
[Brassica napus]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 455
Score = 29.1 bits (62), Expect = 1.9
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = -3
Query: 289 TAREQHVHELAMAAXVHNSSIFAKFDWRQSFTHASISCRD-RFSDVTFVEYTFTAIFTMY 113
TA+ QHVH+ A A + N ++ S + ++ D R V VEY FT + +
Sbjct: 104 TAQHQHVHDPAAAFYISNPAVQFPASQNSSSSSKNLLSDDLRLKIVKQVEYQFTDMSLLA 163
Query: 112 QPLMKKFLT 86
+ K ++
Sbjct: 164 NESISKHIS 172
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -1
Query: 513 SWPTASYAAPP*LASKNFLNHCKNSKLSWKRPFTSLSMGTILST 382
+WP + A P S +H K K S++R +SLS G ++ T
Sbjct: 592 TWPEENLPANPLSTSAMNASHYKFLKSSYQRASSSLSWGMVIVT 635
>At5g39880.1 68418.m04837 expressed protein
Length = 363
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +2
Query: 455 FKKFFDANYGG-AAYDAVGHEKV 520
FK FF+ +GG A YDA G KV
Sbjct: 319 FKNFFNVGFGGKAQYDAAGKMKV 341
>At3g52720.2 68416.m05809 carbonic anhydrase family protein low
similarity to storage protein (dioscorin) [Dioscorea
cayenensis] GI:433463; contains Pfam profile PF00194:
Eukaryotic-type carbonic anhydrase
Length = 230
Score = 27.9 bits (59), Expect = 4.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 298 HWYTAREQHVHELAMAAXVH 239
HW+T E H+H + AA +H
Sbjct: 119 HWHTPSEHHLHGVQYAAELH 138
>At3g52720.1 68416.m05808 carbonic anhydrase family protein low
similarity to storage protein (dioscorin) [Dioscorea
cayenensis] GI:433463; contains Pfam profile PF00194:
Eukaryotic-type carbonic anhydrase
Length = 284
Score = 27.9 bits (59), Expect = 4.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 298 HWYTAREQHVHELAMAAXVH 239
HW+T E H+H + AA +H
Sbjct: 119 HWHTPSEHHLHGVQYAAELH 138
>At1g48800.1 68414.m05461 terpene synthase/cyclase family protein
similar to terpene cyclase GI:9293912 from [Arabidopsis
thaliana]
Length = 603
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = -3
Query: 355 YFKVLYIFM-FQICLKFDSFHWYTAREQHVHELAMAAXVHNSSIFAKFDWRQSFTHASIS 179
YF V I + + K +++ W R++ V ++ A + N K D R+ + SI+
Sbjct: 463 YFTVAGILLGMENINKKEAYEWLIFRDKLVRAMSTKARLVNDLFGYKDDMRRGYVTNSIN 522
Query: 178 CRDRFSDVT 152
C + VT
Sbjct: 523 CYKKQYGVT 531
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,922,614
Number of Sequences: 28952
Number of extensions: 249478
Number of successful extensions: 593
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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