Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0439
(514 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 144 9e-36
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 142 2e-35
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 142 2e-35
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 142 2e-35
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 142 2e-35
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 85 8e-18
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 44 1e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 42 4e-05
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 42 5e-05
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 27 1.6
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 27 2.2
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 26 3.8
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 6.7
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 25 6.7
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha... 25 6.7
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 25 6.7
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 25 8.8
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 144 bits (348), Expect = 9e-36
Identities = 72/87 (82%), Positives = 78/87 (89%)
Frame = +1
Query: 1 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 180
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFA
Sbjct: 63 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 122
Query: 181 GKQLEDGRTLSDYNIQKESTLHLVLDL 261
GKQLEDGRTLSDYNIQKESTLHLVL L
Sbjct: 123 GKQLEDGRTLSDYNIQKESTLHLVLRL 149
Score = 144 bits (348), Expect = 9e-36
Identities = 72/87 (82%), Positives = 78/87 (89%)
Frame = +1
Query: 1 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 180
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFA
Sbjct: 139 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 198
Query: 181 GKQLEDGRTLSDYNIQKESTLHLVLDL 261
GKQLEDGRTLSDYNIQKESTLHLVL L
Sbjct: 199 GKQLEDGRTLSDYNIQKESTLHLVLRL 225
Score = 144 bits (348), Expect = 9e-36
Identities = 72/87 (82%), Positives = 78/87 (89%)
Frame = +1
Query: 1 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 180
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFA
Sbjct: 215 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 274
Query: 181 GKQLEDGRTLSDYNIQKESTLHLVLDL 261
GKQLEDGRTLSDYNIQKESTLHLVL L
Sbjct: 275 GKQLEDGRTLSDYNIQKESTLHLVLRL 301
Score = 144 bits (348), Expect = 9e-36
Identities = 72/87 (82%), Positives = 78/87 (89%)
Frame = +1
Query: 1 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 180
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFA
Sbjct: 291 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 350
Query: 181 GKQLEDGRTLSDYNIQKESTLHLVLDL 261
GKQLEDGRTLSDYNIQKESTLHLVL L
Sbjct: 351 GKQLEDGRTLSDYNIQKESTLHLVLRL 377
Score = 142 bits (345), Expect = 2e-35
Identities = 69/73 (94%), Positives = 72/73 (98%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 222
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 223 IQKESTLHLVLDL 261
IQKESTLHLVL L
Sbjct: 61 IQKESTLHLVLRL 73
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 142 bits (345), Expect = 2e-35
Identities = 69/73 (94%), Positives = 72/73 (98%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 222
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 223 IQKESTLHLVLDL 261
IQKESTLHLVL L
Sbjct: 61 IQKESTLHLVLRL 73
Score = 102 bits (244), Expect = 4e-23
Identities = 44/52 (84%), Positives = 45/52 (86%)
Frame = +3
Query: 255 RLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTNNLRP 410
RLRGG IEPSL+ LA KYNCEK ICRKCYARL PRATNCRK KCGHTN LRP
Sbjct: 72 RLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQLRP 123
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 142 bits (345), Expect = 2e-35
Identities = 69/73 (94%), Positives = 72/73 (98%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 222
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 223 IQKESTLHLVLDL 261
IQKESTLHLVL L
Sbjct: 61 IQKESTLHLVLRL 73
Score = 102 bits (244), Expect = 4e-23
Identities = 44/52 (84%), Positives = 45/52 (86%)
Frame = +3
Query: 255 RLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTNNLRP 410
RLRGG IEPSL+ LA KYNCEK ICRKCYARL PRATNCRK KCGHTN LRP
Sbjct: 72 RLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQLRP 123
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 142 bits (345), Expect = 2e-35
Identities = 69/73 (94%), Positives = 72/73 (98%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 222
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 223 IQKESTLHLVLDL 261
IQKESTLHLVL L
Sbjct: 61 IQKESTLHLVLRL 73
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 142 bits (345), Expect = 2e-35
Identities = 69/73 (94%), Positives = 72/73 (98%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 222
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 223 IQKESTLHLVLDL 261
IQKESTLHLVL L
Sbjct: 61 IQKESTLHLVLRL 73
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 84.6 bits (200), Expect = 8e-18
Identities = 37/73 (50%), Positives = 53/73 (72%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 222
M I VKTLTGK I L+++ +D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 223 IQKESTLHLVLDL 261
++ S LHLVL L
Sbjct: 61 LEGGSVLHLVLAL 73
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 44.4 bits (100), Expect = 1e-05
Identities = 19/71 (26%), Positives = 41/71 (57%)
Frame = +1
Query: 73 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 252
K + +V A I +K KIQ ++ ++Q+LI++G+ L D +T+ +YNI+++ + +
Sbjct: 12 KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQDFIVCM 71
Query: 253 LDLEEVQLNLP 285
+ + + P
Sbjct: 72 VSRPKTSTSTP 82
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 42.3 bits (95), Expect = 4e-05
Identities = 21/73 (28%), Positives = 39/73 (53%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 222
+ + +K + + V++ ++ +K I I ++QRLI+AG+ L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 223 IQKESTLHLVLDL 261
IQ ++HLV L
Sbjct: 64 IQDGHSIHLVKTL 76
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 41.9 bits (94), Expect = 5e-05
Identities = 21/72 (29%), Positives = 39/72 (54%)
Frame = +1
Query: 70 GKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 249
GK LE+E ++T +K ++ +PP++Q++I G QL+D L I+ +TL +
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATLLM 69
Query: 250 VLDLEEVQLNLP 285
+ E+ +P
Sbjct: 70 MGTAGELPTAMP 81
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 27.1 bits (57), Expect = 1.6
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Frame = +1
Query: 46 QIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD--Y 219
+I V T+ K +V + T+ +K I P D+ +LI AG+ L + L + +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILH 64
Query: 220 NIQKESTLHLVLDL-EEVQLNLPFAFS 297
+ T HLV+ + LP A S
Sbjct: 65 DATDLVTFHLVIAVFNSTSTTLPSATS 91
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +1
Query: 115 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLD 258
+++A + KE ++ R+I +G G SDY++ +E +HL++D
Sbjct: 331 SIEASDRFKENSMWEKNRMITSGVSKAPGLE-SDYSLMEERRVHLLVD 377
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 25.8 bits (54), Expect = 3.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 317 LTVILHGENAKGRFNCTSSKSKTR*SVDS 231
L I+HG N R N + KSK R V+S
Sbjct: 271 LPAIVHGNNKNARKNIATLKSKIRDIVNS 299
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.0 bits (52), Expect = 6.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 123 FDIFDSVGSFHLQCNGLPRKGFDEYLH 43
F ++S+G + L C + FDEYL+
Sbjct: 2887 FKPYESLGKYMLSCLDDGKYAFDEYLY 2913
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.0 bits (52), Expect = 6.7
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +1
Query: 16 LRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 171
L V +S + + KTL +EA++ + +K Q K +PP + L
Sbjct: 618 LEVKNYSKSTDLLKKTLRIPRNDEPLEAANQFDLLKVSPQQKSEVPPKRNEL 669
>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 541
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 117 IFDSVGSFHLQCNGLPRKGFDEYL 46
IF VG+F C+ L ++GF E L
Sbjct: 43 IFPGVGNFGFVCDSLAKQGFLEPL 66
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 25.0 bits (52), Expect = 6.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 329 ANHFLTVILHGENAKGRFNCTSSKSKT 249
A+H +++HG + G FN S+S T
Sbjct: 437 ASHSNPIMMHGNDFGGNFNNMQSRSTT 463
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 24.6 bits (51), Expect = 8.8
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Frame = +1
Query: 64 LTGKTITLEVEASDTIENVKAKIQDKEGIP---PDQQRLIFAGKQLEDGRTLSDYNIQKE 234
L G T EV T+ + + +G P P + I A +G TL+ YN
Sbjct: 94 LKGPERTSEVSLPQTVNLSEISNNNDKGQPTNTPPVRSTIVAPSLYSEGSTLNHYNNGSH 153
Query: 235 STLH 246
LH
Sbjct: 154 QVLH 157
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,161,069
Number of Sequences: 5004
Number of extensions: 43695
Number of successful extensions: 123
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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