Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0439
(514 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.) 145 2e-35
SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0) 145 2e-35
SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.) 144 4e-35
SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0) 144 4e-35
SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29) 131 4e-31
SB_23330| Best HMM Match : Ribosomal_L40e (HMM E-Value=1.8e-32) 111 2e-25
SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037) 79 3e-15
SB_30857| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 7e-08
SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10) 52 4e-07
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0) 45 3e-05
SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11) 44 1e-04
SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12) 38 0.004
SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05) 36 0.015
SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.045
SB_49791| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.060
SB_32865| Best HMM Match : AA_permease (HMM E-Value=7.7e-07) 34 0.079
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18) 33 0.14
SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01) 32 0.32
SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.56
SB_54258| Best HMM Match : ubiquitin (HMM E-Value=0.00055) 31 0.56
SB_11656| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_49939| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0) 29 3.0
SB_31564| Best HMM Match : ubiquitin (HMM E-Value=0.0026) 28 3.9
SB_19705| Best HMM Match : zf-C2H2 (HMM E-Value=6e-07) 28 3.9
SB_40252| Best HMM Match : LRR_1 (HMM E-Value=8.2e-12) 28 5.2
SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012) 28 5.2
SB_39225| Best HMM Match : NIF (HMM E-Value=0) 27 6.9
SB_9274| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_23848| Best HMM Match : H-kinase_dim (HMM E-Value=1.5) 27 6.9
>SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 145 bits (352), Expect = 2e-35
Identities = 74/87 (85%), Positives = 77/87 (88%)
Frame = +1
Query: 1 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 180
K+S + V+ MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFA
Sbjct: 63 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 122
Query: 181 GKQLEDGRTLSDYNIQKESTLHLVLDL 261
GKQLEDGRTLSDYNIQKESTLHLVL L
Sbjct: 123 GKQLEDGRTLSDYNIQKESTLHLVLRL 149
Score = 145 bits (352), Expect = 2e-35
Identities = 74/87 (85%), Positives = 77/87 (88%)
Frame = +1
Query: 1 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 180
K+S + V+ MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFA
Sbjct: 139 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 198
Query: 181 GKQLEDGRTLSDYNIQKESTLHLVLDL 261
GKQLEDGRTLSDYNIQKESTLHLVL L
Sbjct: 199 GKQLEDGRTLSDYNIQKESTLHLVLRL 225
Score = 145 bits (352), Expect = 2e-35
Identities = 74/87 (85%), Positives = 77/87 (88%)
Frame = +1
Query: 1 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 180
K+S + V+ MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFA
Sbjct: 215 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 274
Query: 181 GKQLEDGRTLSDYNIQKESTLHLVLDL 261
GKQLEDGRTLSDYNIQKESTLHLVL L
Sbjct: 275 GKQLEDGRTLSDYNIQKESTLHLVLRL 301
Score = 145 bits (352), Expect = 2e-35
Identities = 74/87 (85%), Positives = 77/87 (88%)
Frame = +1
Query: 1 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 180
K+S + V+ MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFA
Sbjct: 291 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 350
Query: 181 GKQLEDGRTLSDYNIQKESTLHLVLDL 261
GKQLEDGRTLSDYNIQKESTLHLVL L
Sbjct: 351 GKQLEDGRTLSDYNIQKESTLHLVLRL 377
Score = 145 bits (352), Expect = 2e-35
Identities = 74/87 (85%), Positives = 77/87 (88%)
Frame = +1
Query: 1 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 180
K+S + V+ MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFA
Sbjct: 367 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 426
Query: 181 GKQLEDGRTLSDYNIQKESTLHLVLDL 261
GKQLEDGRTLSDYNIQKESTLHLVL L
Sbjct: 427 GKQLEDGRTLSDYNIQKESTLHLVLRL 453
Score = 145 bits (352), Expect = 2e-35
Identities = 74/87 (85%), Positives = 77/87 (88%)
Frame = +1
Query: 1 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 180
K+S + V+ MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFA
Sbjct: 443 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 502
Query: 181 GKQLEDGRTLSDYNIQKESTLHLVLDL 261
GKQLEDGRTLSDYNIQKESTLHLVL L
Sbjct: 503 GKQLEDGRTLSDYNIQKESTLHLVLRL 529
Score = 144 bits (349), Expect = 4e-35
Identities = 71/73 (97%), Positives = 71/73 (97%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 222
MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 223 IQKESTLHLVLDL 261
IQKESTLHLVL L
Sbjct: 61 IQKESTLHLVLRL 73
>SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 381
Score = 145 bits (352), Expect = 2e-35
Identities = 74/87 (85%), Positives = 77/87 (88%)
Frame = +1
Query: 1 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 180
K+S + V+ MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFA
Sbjct: 63 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 122
Query: 181 GKQLEDGRTLSDYNIQKESTLHLVLDL 261
GKQLEDGRTLSDYNIQKESTLHLVL L
Sbjct: 123 GKQLEDGRTLSDYNIQKESTLHLVLRL 149
Score = 145 bits (352), Expect = 2e-35
Identities = 74/87 (85%), Positives = 77/87 (88%)
Frame = +1
Query: 1 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 180
K+S + V+ MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFA
Sbjct: 139 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 198
Query: 181 GKQLEDGRTLSDYNIQKESTLHLVLDL 261
GKQLEDGRTLSDYNIQKESTLHLVL L
Sbjct: 199 GKQLEDGRTLSDYNIQKESTLHLVLRL 225
Score = 145 bits (352), Expect = 2e-35
Identities = 74/87 (85%), Positives = 77/87 (88%)
Frame = +1
Query: 1 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 180
K+S + V+ MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFA
Sbjct: 215 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 274
Query: 181 GKQLEDGRTLSDYNIQKESTLHLVLDL 261
GKQLEDGRTLSDYNIQKESTLHLVL L
Sbjct: 275 GKQLEDGRTLSDYNIQKESTLHLVLRL 301
Score = 145 bits (352), Expect = 2e-35
Identities = 74/87 (85%), Positives = 77/87 (88%)
Frame = +1
Query: 1 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 180
K+S + V+ MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFA
Sbjct: 291 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 350
Query: 181 GKQLEDGRTLSDYNIQKESTLHLVLDL 261
GKQLEDGRTLSDYNIQKESTLHLVL L
Sbjct: 351 GKQLEDGRTLSDYNIQKESTLHLVLRL 377
Score = 144 bits (349), Expect = 4e-35
Identities = 71/73 (97%), Positives = 71/73 (97%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 222
MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 223 IQKESTLHLVLDL 261
IQKESTLHLVL L
Sbjct: 61 IQKESTLHLVLRL 73
>SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 144 bits (349), Expect = 4e-35
Identities = 71/73 (97%), Positives = 71/73 (97%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 222
MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 223 IQKESTLHLVLDL 261
IQKESTLHLVL L
Sbjct: 61 IQKESTLHLVLRL 73
>SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 147
Score = 144 bits (349), Expect = 4e-35
Identities = 71/73 (97%), Positives = 71/73 (97%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 222
MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 223 IQKESTLHLVLDL 261
IQKESTLHLVL L
Sbjct: 61 IQKESTLHLVLRL 73
Score = 85.0 bits (201), Expect = 3e-17
Identities = 45/85 (52%), Positives = 61/85 (71%)
Frame = +1
Query: 1 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 180
K+S + V+ MQI VK KT TL+VEASDT+E+VK KIQ++EGIPP QRL++
Sbjct: 63 KESTLHLVLRLRGGMQISVKA-HWKTFTLDVEASDTVESVKEKIQNREGIPPKVQRLLYE 121
Query: 181 GKQLEDGRTLSDYNIQKESTLHLVL 255
++L D R+L+DYNI++ S LHL L
Sbjct: 122 EEELVDNRSLADYNIKQGSILHLFL 146
>SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29)
Length = 142
Score = 131 bits (316), Expect = 4e-31
Identities = 63/66 (95%), Positives = 65/66 (98%)
Frame = +1
Query: 34 SNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 213
++TMQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS
Sbjct: 76 TSTMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 135
Query: 214 DYNIQK 231
DYNIQK
Sbjct: 136 DYNIQK 141
>SB_23330| Best HMM Match : Ribosomal_L40e (HMM E-Value=1.8e-32)
Length = 78
Score = 111 bits (268), Expect = 2e-25
Identities = 47/52 (90%), Positives = 49/52 (94%)
Frame = +3
Query: 255 RLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTNNLRP 410
RLRGG IEPSLRILA KYNC+KMICRKCYARLHPRATNCRK KCGH+NNLRP
Sbjct: 22 RLRGGVIEPSLRILAQKYNCDKMICRKCYARLHPRATNCRKKKCGHSNNLRP 73
>SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037)
Length = 150
Score = 78.6 bits (185), Expect = 3e-15
Identities = 37/38 (97%), Positives = 37/38 (97%)
Frame = +1
Query: 148 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLDL 261
IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL L
Sbjct: 2 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 39
Score = 54.0 bits (124), Expect = 7e-08
Identities = 23/26 (88%), Positives = 24/26 (92%)
Frame = +3
Query: 255 RLRGGTIEPSLRILAMKYNCEKMICR 332
RLRGG IEPSLRILA KYNC+KMICR
Sbjct: 38 RLRGGVIEPSLRILAQKYNCDKMICR 63
>SB_30857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 54.0 bits (124), Expect = 7e-08
Identities = 23/26 (88%), Positives = 24/26 (92%)
Frame = +3
Query: 255 RLRGGTIEPSLRILAMKYNCEKMICR 332
RLRGG IEPSLRILA KYNC+KMICR
Sbjct: 22 RLRGGVIEPSLRILAQKYNCDKMICR 47
>SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)
Length = 333
Score = 51.6 bits (118), Expect = 4e-07
Identities = 31/72 (43%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +1
Query: 49 IFVKTLTGKTITLEVEA-SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 225
I V TLTG+ I + ++ TI VK I+ K G P DQQRL+F G+ L D T I
Sbjct: 73 IAVLTLTGERILIPFKSPKHTIIEVKYLIEAKGGYPKDQQRLVFNGQVLSDEDTFEKVGI 132
Query: 226 QKESTLHLVLDL 261
+TLHL++ L
Sbjct: 133 FAGATLHLIVRL 144
>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 1023
Score = 45.2 bits (102), Expect = 3e-05
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Frame = +1
Query: 34 SNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQ---DKEGIPPDQQRLIFAGKQLEDGR 204
S M I KTL +T +E+ +T+ +K KI+ K+ P +LI+AGK L D
Sbjct: 64 SVNMIITFKTLQQQTFKVEIGEDETVLKLKQKIEADKGKDAYPHGNIKLIYAGKILNDDN 123
Query: 205 TLSDYNIQKES 237
L +YNI ++S
Sbjct: 124 PLKEYNIDEKS 134
>SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11)
Length = 744
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = +1
Query: 40 TMQIFVKTLTGKTITLEVEASDT-IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 216
T Q+F T TL +D + +K++I+ K GIP D QRL F K+L D TL+
Sbjct: 5 TFQVFAALPTEDVCTLRDLTTDMHVFQLKSRIELKTGIPGDIQRLHFMNKELYDDATLAK 64
Query: 217 YNIQKESTLHLVLD 258
N+++ + + +D
Sbjct: 65 VNLKQGCIVRIKMD 78
>SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12)
Length = 348
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDY 219
M++ V G TL+V +EN +A ++ + G+P + L G QL D +TL+ Y
Sbjct: 1 MKVTVTGEDGSIFTLDVSVDLEVENFRALLEFESGVPASEISLYHDGVQLSDLKKTLTAY 60
Query: 220 NIQKESTLHLV 252
++++ + +V
Sbjct: 61 SVKENDVILMV 71
>SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05)
Length = 198
Score = 36.3 bits (80), Expect = 0.015
Identities = 23/60 (38%), Positives = 33/60 (55%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 222
MQ+ VKTL +T T V +EGIP ++QRLIF GK L+D + L +++
Sbjct: 1 MQVTVKTLDSETRTFTVS--------------EEGIPAERQRLIFKGKVLQDEKKLKEFD 46
>SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1076
Score = 34.7 bits (76), Expect = 0.045
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 67 TGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TL 243
+G L++ + TIE ++ ++ DK G PP QR I K + +L +++ T
Sbjct: 44 SGGAFNLQIPLNTTIEKLQNEVADKYGFPPKVQRWIIGKKMAKPNESLLQCKVRETGFTA 103
Query: 244 HLVL 255
+L L
Sbjct: 104 YLYL 107
>SB_49791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 35
Score = 34.3 bits (75), Expect = 0.060
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKE 144
M ++++TLTG L V +TI +VKAKIQ E
Sbjct: 1 MDLYIQTLTGTAFELRVSPFETIMSVKAKIQRLE 34
>SB_32865| Best HMM Match : AA_permease (HMM E-Value=7.7e-07)
Length = 642
Score = 33.9 bits (74), Expect = 0.079
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = -3
Query: 440 GYYLILDLLFGSQIVSVSALCLATVGSTRMKTGIAFTANHF 318
G +++ LL G+ V +S+LC A GS KTG ++T +F
Sbjct: 19 GPAIVISLLIGAIPVCLSSLCYAEFGSRISKTGSSYTYTYF 59
>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
Length = 796
Score = 33.1 bits (72), Expect = 0.14
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +1
Query: 145 GIPPDQQRLIFAGKQLEDGRTLSDYN 222
GIP ++QRLIF GK L+D + L +++
Sbjct: 1 GIPAERQRLIFKGKVLQDEKKLKEFD 26
>SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01)
Length = 792
Score = 31.9 bits (69), Expect = 0.32
Identities = 16/64 (25%), Positives = 35/64 (54%)
Frame = +1
Query: 49 IFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 228
+ ++T G T+ +E+ ++E++KA+ + + GIP + RL LED + +
Sbjct: 185 MLLQTRGGSTLEIEITERTSVEDLKAEAELRVGIPVELIRLQVNKVNLEDSEKICERGHL 244
Query: 229 KEST 240
+++T
Sbjct: 245 QKAT 248
>SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1353
Score = 31.1 bits (67), Expect = 0.56
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 106 TIENVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLSDYNIQKESTLHL 249
T+ ++K + +K G+ RL+ GK++ D L DYNI T+ L
Sbjct: 86 TVGDLKTMVTNKTGLHVSVFRLVIPEGKEMFDCNLLKDYNISTGDTIRL 134
>SB_54258| Best HMM Match : ubiquitin (HMM E-Value=0.00055)
Length = 411
Score = 31.1 bits (67), Expect = 0.56
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +1
Query: 52 FVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 231
FV G+ ITL + ++ + G P + ++ K LED T++D + Q
Sbjct: 169 FVVMPEGQVITLHCNPRQSFSELRNHFSSEFGQPAEAILMLHEDKILEDQGTIADLSHQP 228
Query: 232 ESTLHLVL-DLEEVQLNLPF 288
+TL + L + V +L F
Sbjct: 229 GATLQIELQSTDPVNASLSF 248
>SB_11656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 70 GKTITLEVE-ASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 198
G T E+E A +++E + I GIP D+Q L+ G + D
Sbjct: 10 GAMYTFEMEMAMESVETLMGSIASSTGIPVDKQVLLICGGEALD 53
>SB_49939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 167 VSSLPGNN*KMAALFQTITSRKNPHFTWF 253
+ ++ N K+AA+ I+S NP FTWF
Sbjct: 8 IGAIASNAEKVAAVAGAISSLDNPGFTWF 36
>SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 746
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 407 SQIVSVSALCLATVGSTRMKTGIAFTANHFLTVILHGENAKG 282
S + LC+ +G+ + GIAF A L ++ G+NA+G
Sbjct: 252 SLLAQTLKLCIPKIGAFVIVYGIAFFAYAQLACLVFGQNAEG 293
>SB_31564| Best HMM Match : ubiquitin (HMM E-Value=0.0026)
Length = 309
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = +1
Query: 55 VKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR---TLSDYNI 225
V + G+T + +I +K KI + +QRL++ +L++ + LS++ +
Sbjct: 60 VAMMGGETTVIPYNPVMSIAELKLKISQNIRVDRLKQRLMYNDTELKENKGSGKLSEFGV 119
Query: 226 QKESTLHLVLDLEEV 270
+T+ L++ L E+
Sbjct: 120 PPYATISLIVVLYEI 134
>SB_19705| Best HMM Match : zf-C2H2 (HMM E-Value=6e-07)
Length = 503
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 309 NCEKMICRKCYARLHPRATNCRKTKCGHTNNLRP 410
N + ++CR C R +P KC +T N RP
Sbjct: 347 NADYVLCRYCQRRFNPTVAERHIPKCANTTN-RP 379
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 309 NCEKMICRKCYARLHPRATNCRKTKCGHTNNLRP 410
N + ++CR C R +P KC +T N RP
Sbjct: 435 NPDYVLCRYCQRRFNPTVAERHIPKCANTTN-RP 467
>SB_40252| Best HMM Match : LRR_1 (HMM E-Value=8.2e-12)
Length = 481
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = +1
Query: 64 LTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 195
L G +IT+ +E D +EN++ +K+ +PP ++L+F + L+
Sbjct: 102 LGGNSITV-IEGLDKLENLRELHMEKQHLPPG-EKLLFDPRTLQ 143
>SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)
Length = 1148
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/62 (22%), Positives = 35/62 (56%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 222
+Q ++T GKTI L E + ++ + ++K+G+ + ++L + ++L+ T ++
Sbjct: 714 LQDSLETAEGKTIKLTQELDEKMKLIAGIKEEKQGLAAEVKQLQKSSEELQQQLTDTEEK 773
Query: 223 IQ 228
+Q
Sbjct: 774 LQ 775
>SB_39225| Best HMM Match : NIF (HMM E-Value=0)
Length = 1772
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 357 EDEDGHSIYGKSFSHSYTSWRECEGK 280
++E I SFS T WR CEG+
Sbjct: 775 DEEMNQVIISSSFSAKLTKWRVCEGQ 800
>SB_9274| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1230
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = +3
Query: 39 HNANIRQNPYGEDHYI--GGGSFRHY 110
HNA I++N G D+Y+ GGG + Y
Sbjct: 187 HNAPIKRNCSGNDYYVKAGGGVYFEY 212
>SB_23848| Best HMM Match : H-kinase_dim (HMM E-Value=1.5)
Length = 106
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/62 (22%), Positives = 34/62 (54%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 222
+Q ++T GKTI L E + ++ + ++K+G+ + + L + ++L+ T ++
Sbjct: 10 LQDSLETAEGKTIKLTQELDEKMKLIAGIKEEKQGLVAEVEHLQKSSEELQQQLTDTEEK 69
Query: 223 IQ 228
+Q
Sbjct: 70 LQ 71
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,303,957
Number of Sequences: 59808
Number of extensions: 354940
Number of successful extensions: 898
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -