Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0438
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   1.2  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   2.7  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    26   3.6  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    26   3.6  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = -2

Query: 315 PLXTSLFLFCGITVLRCIVASXASPFSAGESSGASSVPFSLPLLSAASTFL-AGDFLTG- 142
           P  TSL +    T      AS +SP S   S  +SS   S P  S +S  + +   ++G 
Sbjct: 587 PSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGS 646

Query: 141 DXFGSVEVTXSGATSFLSTAASAIV 67
               S  ++    +S LST +S+++
Sbjct: 647 SSILSSSISTIPISSSLSTYSSSVI 671


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 22/71 (30%), Positives = 35/71 (49%)
 Frame = -2

Query: 279  TVLRCIVASXASPFSAGESSGASSVPFSLPLLSAASTFLAGDFLTGDXFGSVEVTXSGAT 100
            TV+   V   +S   +  SS  SSV  +  LLS++  F +  F TG    S+  + +G+ 
Sbjct: 3484 TVITSSVVIGSSSVLSYASSIVSSVSLNSSLLSSSGGFSSSAFSTGSSSFSL-TSENGSV 3542

Query: 99   SFLSTAASAIV 67
            S  S  +S+ V
Sbjct: 3543 SSSSLVSSSPV 3553


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 268 MHRCFXGITIFSRRIFWGFIGTILFA 191
           M   F G TI+   +F G +GT L A
Sbjct: 369 MRNFFPGFTIYFPALFLGVVGTFLIA 394


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = -2

Query: 225 SSGASSVPFSLPLLSAASTFLAGDFLTGDXFGSVEVTXSGATSFLSTAASAIVA 64
           SSG++ VP S+P L      L  D+ T +    +      ATSF  T  S I A
Sbjct: 168 SSGSTGVPKSMPFLMKKYA-LGYDYGTPEFMNHLSTPMVMATSFALTTLSWINA 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,460,836
Number of Sequences: 5004
Number of extensions: 20144
Number of successful extensions: 70
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)