Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0438
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0633 + 19540584-19541383,19541557-19541610,19542123-19542444     27   8.4  
06_01_0643 + 4661713-4661901,4661907-4662155,4662307-4662336           27   8.4  

>08_02_0633 + 19540584-19541383,19541557-19541610,19542123-19542444
          Length = 391

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = -2

Query: 261 VASXASPFSAGESSGASSVPFSLPLLSAASTFLAGDFLTGDXFGSVEVTXSGATS 97
           +A+  +  S        ++P + PL++AAS+    D   G   G  E + S A +
Sbjct: 184 IAASKNASSRSRGGAGRAMPINAPLVAAASSSSGSDHSGGGDDGGSETSSSSAAA 238


>06_01_0643 + 4661713-4661901,4661907-4662155,4662307-4662336
          Length = 155

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -2

Query: 261 VASXASPFSAGESSGASSVPFS--LPLLSAASTFLAGDFLTGDXFGSVEVTXSGATSFLS 88
           VA      SAGE+SG  +VP++  L L   AS   +G  +T     S  V   G T FL 
Sbjct: 84  VAGDTDGDSAGEASGTGTVPYAEFLRLCCDASGAESGASVTCALDESGSVIVLGKTVFLR 143

Query: 87  TAASAIVA 64
              S  ++
Sbjct: 144 PEMSVFLS 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,487,217
Number of Sequences: 37544
Number of extensions: 135236
Number of successful extensions: 392
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)