Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0438
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_15422| Best HMM Match : TACC (HMM E-Value=6.4e-20)                  29   2.8  
SB_3796| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.7  

>SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 956

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = -2

Query: 261 VASXASPFSAGESSGASSVPFSLPLLSAASTFLAGDFLTGDXFGSVEVTXSGATSFLSTA 82
           VAS +S  SA  S+ ASS P  +   ++ +T L    LT   F +  V    A+S  ST 
Sbjct: 298 VASSSSSTSATTSNIASSAPAPISSTASTTTLLGQQGLTSSSFATNLVGQQTASSTPSTT 357

Query: 81  A 79
           +
Sbjct: 358 S 358


>SB_15422| Best HMM Match : TACC (HMM E-Value=6.4e-20)
          Length = 1362

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = -2

Query: 261 VASXASPFSAGESSGASSVPFSLPLLSAASTFLAGDFLTGDXFGSVEVTXSGATSFLSTA 82
           + + A  FS G   G    PF LP++S AS        +   FG V++  S   + +S+ 
Sbjct: 641 LGTSAFMFSLGNPDGRK--PFKLPIISPASVAATSTSTSMPCFGRVDLVLSDVMANISSQ 698

Query: 81  ASA 73
           +++
Sbjct: 699 STS 701


>SB_3796| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1051

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 298 LSFLWHHRSXMH-RCFXGITIFSRRIFWGFIGTILFAITFCSFNFLSWRL 152
           + + WH     H RC     +F   +FWG++G     + +C F+ + + +
Sbjct: 787 MKYDWHVPDTPHERC-----VFRISLFWGYVGCCYRFLKYCLFDLMRYNI 831


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,965,607
Number of Sequences: 59808
Number of extensions: 152968
Number of successful extensions: 489
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)