Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0434
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy...    69   6e-13
SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor 1|Sch...    59   5e-10
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    31   0.19 
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub...    28   1.0  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    28   1.3  
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    26   4.1  
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    25   7.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   9.4  
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    25   9.4  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    25   9.4  
SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...    25   9.4  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    25   9.4  
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...    25   9.4  

>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 162

 Score = 68.9 bits (161), Expect = 6e-13
 Identities = 38/90 (42%), Positives = 53/90 (58%)
 Frame = +2

Query: 239 SNKNNITSPEIYQPVGPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRH 418
           S K  I SP++    GPY+QAI A+  +Y SG + +  + +++ G    QTRQ L NL+ 
Sbjct: 37  STKTPINSPKL-SSAGPYNQAIKANGVIYCSGQIPV-ANGKVIEGTVGDQTRQCLLNLQE 94

Query: 419 VLEAGGASLESVVKTTVLLASMDDFQTFNK 508
           VL   G+SL  +VK  + LA MDDF   NK
Sbjct: 95  VLTEAGSSLNKIVKVNIFLADMDDFAAVNK 124


>SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 59.3 bits (137), Expect = 5e-10
 Identities = 28/75 (37%), Positives = 43/75 (57%)
 Frame = +2

Query: 284 GPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLEAGGASLESVVKT 463
           GPY+QA+ +   ++ SG   + +D   V G  + QTR  ++NL  VL   G+SLE +VK 
Sbjct: 15  GPYNQAVKSGGLIFCSGQAAV-KDGNFVPGTIQEQTRLTIENLAEVLRVAGSSLEKLVKV 73

Query: 464 TVLLASMDDFQTFNK 508
            + L  +DDF   N+
Sbjct: 74  NIFLTDIDDFAAMNE 88



 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = +1

Query: 505 QIYAEYFPKACPARMTYEVSRLPL---GAAVEIE 597
           ++Y E  P   PAR T    ++PL   G  +EIE
Sbjct: 88  EVYKEMLPDPMPARTTVAAGKIPLSSKGGKIEIE 121


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = +2

Query: 281 VGPYSQAILADKTLYISGILGL 346
           +GPYSQ+I A+  ++ISG +GL
Sbjct: 421 IGPYSQSICANGVVFISGQIGL 442


>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
           subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 462

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 368 CGGAEAQTRQALDNLRHVLEAGGASLESVVK 460
           C G +  T++ +D LR  ++AGG   E  +K
Sbjct: 88  CRGNQLMTQEEIDELRANIKAGGLRAEEAIK 118


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -3

Query: 523  NILHRFVESLEVVHASQQNSSFHDRLQRSATSFKYMSQIVQSL 395
            +I +RFV SL + H  +  +  +D+L  S  SF  +S+I + L
Sbjct: 1463 SISNRFVFSLFMPHLKKVEAIIYDKLPGSDMSFPSISKIYEEL 1505


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
 Frame = +3

Query: 465 LFCWLA---WTTSKLSTNLCRIFS 527
           +FCW     WT+ K    LCR FS
Sbjct: 274 IFCWSCINGWTSKKSECPLCRAFS 297


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 481 HGRLPNFQQIYAEYFPKACPARMTYEVSRLPLGAAVE 591
           H  +    +I +   P+A PA + Y+VS +  G  V+
Sbjct: 270 HNHVEKVYKILSRIHPEAKPAEIAYKVSLIQEGVKVD 306


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -2

Query: 332  QKCIRSCPLKLLDCTDLLVDIFPEML-YCFCYFIVIRIF 219
            +K +RSC  K+L  T L  D+F  +  Y F     +R F
Sbjct: 1223 EKLVRSCLSKILGNTVLSADVFENLQNYGFDSLCAMRFF 1261


>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 284

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 20/57 (35%), Positives = 24/57 (42%)
 Frame = +1

Query: 388 DPSGSGQSATCT*SWWRFVGVGRENYCFVG*HGRLPNFQQIYAEYFPKACPARMTYE 558
           D  G G  AT    W    G+G  N  F    GRL   +  Y  Y  KA   ++TYE
Sbjct: 62  DTLGIGAKATNDLEW---SGLGEFNAIF----GRLNGDESAYGVYAEKAKVQQLTYE 111


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 365 PSVHLDPIREFQKCIRSCPLKLLDCTDLLVDIF 267
           P   L P+  FQ  +R+CPL  +    LL +IF
Sbjct: 135 PGYSLRPV--FQVRLRACPLGSVQFNPLLAEIF 165


>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 445 GVGRENYCFVG*HGRLPNFQQIYAEYFPKACP 540
           G GR  Y  VG   + P  + IY EY  K CP
Sbjct: 26  GAGRRWYKDVGLGFKTPA-EAIYGEYVDKKCP 56


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +1

Query: 280 SRSVQSSNF--SGQDLIHFWNSRIGSRC 357
           S+ +Q   F  SGQD++ FW +R+   C
Sbjct: 504 SKDIQPLPFIESGQDILFFWIARMALLC 531


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 445 GVGRENYCFVG*HGRLPNFQQIYAEYFPKACP 540
           G GR  Y  VG   + P  + IY EY  K CP
Sbjct: 26  GAGRRWYKDVGLGFKTPA-EAIYGEYVDKKCP 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,683,728
Number of Sequences: 5004
Number of extensions: 56535
Number of successful extensions: 176
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)