Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0433
(628 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 183 2e-47
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 96 3e-21
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 83 2e-17
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 81 1e-16
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 2.2
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 26 3.9
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 26 5.1
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 26 5.1
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 25 6.8
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 6.8
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 25 6.8
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 183 bits (445), Expect = 2e-47
Identities = 90/184 (48%), Positives = 115/184 (62%), Gaps = 1/184 (0%)
Frame = +1
Query: 67 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQVR 246
MREIVHIQAGQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA+GG+
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 247 APRILVDLEPGTMDSVRSGPFGQIFRPDNFVFGXXAPATTGPRDTTRRVLSSSIXF*TSL 426
+LVDLEPGTMD+V+SG FG +FRPDN ++G + + +
Sbjct: 61 PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVV 120
Query: 427 XRKRNRVIASRDSN-*HTRSAAAPVTVWDXLISKIREXYPXRIMNTYSVVPSPKVSDTVV 603
R+ A + H+ + L+SKIRE YP R+M T+SV P+PK SDTVV
Sbjct: 121 RREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVV 180
Query: 604 EPYN 615
EPYN
Sbjct: 181 EPYN 184
Score = 97.1 bits (231), Expect = 2e-21
Identities = 43/53 (81%), Positives = 46/53 (86%)
Frame = +3
Query: 351 GAGNNWAKGHYTEGAELVDSXLDVVXKEAESCDCLQGFQLTHSLGGGTGYRMG 509
GAGN WAKGHYTEGAEL D+ LDVV +EAE+CD LQGFQLTHSLGGGTG MG
Sbjct: 96 GAGNIWAKGHYTEGAELADAVLDVVRREAEACDALQGFQLTHSLGGGTGSGMG 148
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 96.3 bits (229), Expect = 3e-21
Identities = 57/188 (30%), Positives = 96/188 (51%), Gaps = 6/188 (3%)
Frame = +1
Query: 70 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQVRA 249
REI+ +QAGQCGNQIG++FW+ + EHGI P G + ++R +V++ ++ +
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 250 PRILVDLEPGTMDSVRSGPFGQIFRPDNFVFGXXAPATTGPRDTTRRVLSSSIXF*TSLX 429
IL+DLEP ++++ S +G ++ P+N + G + S + +
Sbjct: 63 RAILIDLEPRVVNNILSDTYGSLYNPENILITKNG---GGAGNNWANGYSHAERIFEDIM 119
Query: 430 RKRNRVIASRD-----SN*HTRSAAAPVTVWDXLISKIREXYPXRIMNTYSVVP-SPKVS 591
+R D S H+ + + L+ ++ + YP +I+ TYSV P S VS
Sbjct: 120 DMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVS 179
Query: 592 DTVVEPYN 615
D VV+PYN
Sbjct: 180 DVVVQPYN 187
Score = 59.3 bits (137), Expect = 4e-10
Identities = 24/53 (45%), Positives = 35/53 (66%)
Frame = +3
Query: 351 GAGNNWAKGHYTEGAELVDSXLDVVXKEAESCDCLQGFQLTHSLGGGTGYRMG 509
GAGNNWA G Y+ + + +D++ +EA+ D L+GF L HS+ GGTG +G
Sbjct: 99 GAGNNWANG-YSHAERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSGLG 150
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 83.4 bits (197), Expect = 2e-17
Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 5/188 (2%)
Frame = +1
Query: 67 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLE--RINVYYNEASGGQ 240
MREI+ I GQ G QIG WE+ EHGI P G + ++ Q + +++E G+
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 241 VRAPRILVDLEPGTMDSVRSGPFGQIFRPDNFVFGXXAPATTGPRD--TTRRVLSSSIXF 414
I VDLEP +D VR+GP+ +F P+ + G + R T + L +
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVT- 119
Query: 415 *TSLXRKRNRVIASRD-SN*HTRSAAAPVTVWDXLISKIREXYPXRIMNTYSVVPSPKVS 591
+ R + + H+ L+ ++ Y + +SV P+P+VS
Sbjct: 120 -DKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVS 178
Query: 592 DTVVEPYN 615
+VVEPYN
Sbjct: 179 TSVVEPYN 186
Score = 64.1 bits (149), Expect = 2e-11
Identities = 28/52 (53%), Positives = 35/52 (67%)
Frame = +3
Query: 354 AGNNWAKGHYTEGAELVDSXLDVVXKEAESCDCLQGFQLTHSLGGGTGYRMG 509
A NN+A+GHYT G ELVD D + + A++C LQGF + HS GGGTG G
Sbjct: 99 ASNNYARGHYTVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFG 150
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 81.0 bits (191), Expect = 1e-16
Identities = 54/192 (28%), Positives = 87/192 (45%), Gaps = 9/192 (4%)
Frame = +1
Query: 67 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 228
MRE++ + GQ G QIG WE+ EHGI P G H ++ + +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 229 SGGQVRAPRILVDLEPGTMDSVRSGPFGQIFRPDNFVFGXXAPATTGPRD--TTRRVLSS 402
G+ I VDLEP +D VR+GP+ +F P+ V G + R T + +
Sbjct: 61 GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120
Query: 403 SIXF*TSLXRKRNRVIASRD-SN*HTRSAAAPVTVWDXLISKIREXYPXRIMNTYSVVPS 579
S+ + R + + H+ + L+ ++ Y + +SV P+
Sbjct: 121 SVL--ERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPA 178
Query: 580 PKVSDTVVEPYN 615
P+VS +VVEPYN
Sbjct: 179 PQVSTSVVEPYN 190
Score = 65.7 bits (153), Expect = 5e-12
Identities = 27/52 (51%), Positives = 38/52 (73%)
Frame = +3
Query: 354 AGNNWAKGHYTEGAELVDSXLDVVXKEAESCDCLQGFQLTHSLGGGTGYRMG 509
A NN+A+GHYT G E++DS L+ + + A++C LQGF + HS GGGTG +G
Sbjct: 103 ASNNYARGHYTVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLG 154
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 2.2
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +1
Query: 106 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 207
N++G E+++++ +DPT A + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = -2
Query: 372 WPSCCRRRXSEDEVVRTEDLSERSRXDRVHGAGLQVDEDARGTYLPAG 229
+P C +R DE+ R + + R A + AR + PAG
Sbjct: 58 FPGCAKRFSRSDELTRHARIHTNANSRRNAAAAAAANNSARSSNSPAG 105
>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 780
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 396 QHPPCSVPWPSCCRRRXSEDEVVRTE 319
+ P SV W CC S+D V++T+
Sbjct: 525 REPERSVKWMRCCFEPSSDDYVLQTD 550
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +2
Query: 194 SWSASMYTTMKPPAGKYVPRASSSTWSPAPW 286
S +AS PP SSST SPAPW
Sbjct: 396 SGAASPQAGHPPPWAAASTSVSSSTSSPAPW 426
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 25.4 bits (53), Expect = 6.8
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +1
Query: 550 IMNTYSVVPSPKVSDTVVEPYNGH 621
+ S++P P+VSD +++ + GH
Sbjct: 248 VQKALSLLPPPEVSDFLIKSFYGH 271
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 6.8
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 454 SRDSN*HT-RSAAAPVTVWDXLISKIREXYPXRIMNTYSVVPS 579
S++SN A + VT W I +IRE YP + ++ Y ++ S
Sbjct: 2847 SKESNIAVVEEAKSFVTKWKAYIERIREAYP-QFVDVYELILS 2888
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/50 (26%), Positives = 21/50 (42%)
Frame = +1
Query: 193 QLERINVYYNEASGGQVRAPRILVDLEPGTMDSVRSGPFGQIFRPDNFVF 342
QLER+ YY VR +++ + G + + F PD+ F
Sbjct: 290 QLERLRYYYAVVECDSVRTAKVIYETCDGAEYETSANIYDLRFIPDDVTF 339
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,326,440
Number of Sequences: 5004
Number of extensions: 42414
Number of successful extensions: 115
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -