Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0433
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    27   0.11 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.4  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   4.3  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
            ORF for hypotheticalprotein. ).
          Length = 998

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -2

Query: 132  LPELSSDLVAALTSLDMYDFPHFVLFM*TINY--LTLKMLSARSTH 1
            L E + +L  AL+S++   F HFVL M  IN+  +T  ++ AR  H
Sbjct: 870  LVEFALELKKALSSINEQSFNHFVLKM-GINHGPVTAGVIGARKPH 914


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
 Frame = -2

Query: 381  SVPWPSCCRRRXSEDEVVRTED--LSERSRXDRVHGAGLQVDEDAR 250
            S P P    R  S DE    +   L   SR   VH  G Q D D +
Sbjct: 1396 SPPTPLSISRAGSRDEDSTRDSTKLDRSSREREVHNGGQQEDRDRK 1441


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 458 GIPTDTLARRRHRLPYGTFSSPKSEKXT 541
           GIP+ TL +R HRL   T   PK +  T
Sbjct: 438 GIPSTTLWQRAHRLGIDT---PKKDGPT 462


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 249 GTYLPAGGFIVVY 211
           GT+L +GGF +VY
Sbjct: 70  GTFLGSGGFGIVY 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,842
Number of Sequences: 438
Number of extensions: 3310
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)