Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0432
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    31   0.097
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    31   0.13 
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    30   0.17 
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    29   0.52 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   1.2  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    27   2.1  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    27   2.1  
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    26   3.7  
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    26   3.7  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    25   6.4  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    25   6.4  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   6.4  
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as...    25   6.4  
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    25   8.4  
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...    25   8.4  

>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 31.1 bits (67), Expect = 0.097
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +1

Query: 274 PKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSS 417
           P  P ++P    V P +PV P T++     +  P ++P     +VP S
Sbjct: 221 PPQPAVAPSVSAVVPNLPVHPATAINAQSQSGNPLSNPLFQPSNVPQS 268


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 211 VQEILKDMASQGDYAVKHQRWPKPPELSPIYLPVSPVMP 327
           +Q IL+ +A +GD     +  PKPP +  I  P+ P  P
Sbjct: 358 LQSILRSLAIEGDDDEVAKVLPKPPSVPTIQAPIPPEAP 396


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +1

Query: 253 AVKHQRWPKPPELSPIYLPVSPVMPVQPLT---SLTLTQTASGPETSPAS 393
           AVKH   P PP   P+   +SP MP  PLT   S T     S PE+ P S
Sbjct: 739 AVKHH--PPPP---PVRSSISPSMPPAPLTHANSSTPMNYVSQPESPPQS 783


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
 Frame = +1

Query: 214 QEILKDMASQGDYAVKHQRWPKPPELSPIYLPVSPVMPVQP-LTSLTLTQTASGPETSPA 390
           ++I K++A+          WP PP +    L V+     QP ++ +  T   S   T P+
Sbjct: 405 RDIAKNVATWLKNGENFSSWPLPPLMDLASLSVAEPRDSQPSVSQVNDTFVKSSDSTFPS 464

Query: 391 SDNLSVPS---SXTLXKT*ILSIXS 456
           S ++  PS   S T   T +LS  S
Sbjct: 465 SQSMQSPSKLHSLTSNATDLLSSSS 489


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +1

Query: 94  NQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEI-LKDMASQGDYAVKHQ 267
           NQ S      D+D+  ASS++S A     D+D      N+       +A  GD + +H+
Sbjct: 3   NQSSSGSNTSDLDEESASSLVSSAASPFIDSDLETPRPNISRASTGQLAEDGDTSSQHE 61


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = +1

Query: 274 PKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSSXTLXK 432
           P PP + P  LP  P M +  +         + P T+    N SVP   +L K
Sbjct: 424 PFPPFMMP-GLPQMPPMMMNAIAGQVYHNNRNPPRTNSRPSNASVPPPSSLHK 475


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 26/104 (25%), Positives = 42/104 (40%)
 Frame = +1

Query: 163 AWDYVDDTDKSIAILNVQEILKDMASQGDYAVKHQRWPKPPELSPIYLPVSPVMPVQPLT 342
           A++   DT  +   LN  E +  M +QG               SP +   +PV P QPL 
Sbjct: 242 AYEVTGDTRAASPTLNPFEQMMAMTNQGMSVSPGVETTS----SPFF--TAPVEPNQPLQ 295

Query: 343 SLTLTQTASGPETSPASDNLSVPSSXTLXKT*ILSIXSXSTLVN 474
            L  + T   P +  +   L++PS+  +      +  S S + N
Sbjct: 296 PLRPSMTGPVPSSMGSEATLNMPSTYGIDSNLYTNSNSSSIVQN 339


>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +1

Query: 100 YSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAIL-NVQEILKDMASQGDYAVKHQRWP 276
           Y+D+E P D +  K S+++ +A+ +V   +   + L N   I  +  + G    +  R+P
Sbjct: 158 YTDSEAPNDSEKQKNSTLLPKAYLFVPGLENIRSYLPNRHWIESNAITTGKAVEELPRFP 217

Query: 277 KPPE 288
             P+
Sbjct: 218 DDPK 221


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 282 RFGPPLMLDCIIALAGHVLQDLLNVEDGDAFVSVIDVVP 166
           RFGPPLM    + L G V+  +++   G    S+ID  P
Sbjct: 286 RFGPPLMKTTSVVL-GLVVGMIISAATGYWDHSIIDAAP 323


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 23/87 (26%), Positives = 37/87 (42%)
 Frame = +1

Query: 55  VATSAYAAPSVTINQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEILKDM 234
           V T+A  A    + + +DNEIP   D   A+S          + D+ I  L+   +L  +
Sbjct: 386 VKTAAELASLQNVTETTDNEIPNSPDFLDAAS----------EEDEHIPSLDSSSLLTPL 435

Query: 235 ASQGDYAVKHQRWPKPPELSPIYLPVS 315
           A     A +  ++  P   SP+  P S
Sbjct: 436 ALPNKKAFQPVKFRVPSFSSPLVKPAS 462


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +1

Query: 247 DYAVKHQRWPKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVP 411
           DY+    ++P   + SP+   +  +   +P  S +  QTA    +S  SD  S P
Sbjct: 152 DYSKVSGKYPSVIDNSPVKSKLGALPSARPRLSYSAAQTAPISLSSEGSDYFSRP 206


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = +1

Query: 271 WPKPPELS-PIY-----LPVSPVMPVQPLTSLTLTQTASGPETSP 387
           +P P  +S P Y     +PVSP +PV P +S       + P + P
Sbjct: 287 YPHPTGISLPFYPFDSGIPVSPNIPVSPSSSFVPMYPTTFPSSKP 331


>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
           associated subunit Sfc1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +1

Query: 172 YVDDTDKSIAILNVQEILKDMASQGDYAVKHQRWPKPPELSPIYLPVS 315
           +V   D ++ +L+   I K          KH   P PP  S   LP+S
Sbjct: 114 FVQKLDSTLRVLDYNAINKFSIDLTPVQRKHVDMPPPPVFSQTSLPMS 161


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 247 DYAVKHQRWPKPPELSPIYLPVSPV 321
           +Y+      P+PP+L+P++L V  V
Sbjct: 107 EYSTIEYTLPRPPQLTPVFLFVVDV 131


>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -1

Query: 485 EYRKLTRVDXXLIDKIQVLX-NVXEEGTERLSEAGEVSGPDAVCVRVN 345
           EY  +T +    +   ++   +V E   +RL  A  +SG  A+C+  N
Sbjct: 102 EYAPITGIPSFRVQATKLAYGDVYESIKDRLVSAQSISGTGALCIAAN 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,862,632
Number of Sequences: 5004
Number of extensions: 34849
Number of successful extensions: 137
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)