Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0432
         (500 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47241| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.93 
SB_54110| Best HMM Match : Hexapep (HMM E-Value=9.8e-14)               30   1.2  
SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0)               29   2.2  
SB_9053| Best HMM Match : TIG (HMM E-Value=0)                          29   2.2  
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.2  
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_38688| Best HMM Match : TP901-1_ORF40 (HMM E-Value=1.7)             28   3.8  
SB_38050| Best HMM Match : Hexapep (HMM E-Value=0.04)                  28   5.0  
SB_34483| Best HMM Match : Hexapep (HMM E-Value=0.0027)                28   5.0  
SB_19312| Best HMM Match : DEP (HMM E-Value=2.5e-09)                   28   5.0  
SB_18191| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_36300| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)                   28   5.0  
SB_5677| Best HMM Match : fn3 (HMM E-Value=0.0092)                     28   5.0  
SB_53106| Best HMM Match : PLAT (HMM E-Value=0)                        27   6.6  
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_997| Best HMM Match : Hexapep (HMM E-Value=6.8e-15)                 27   8.7  

>SB_47241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 30.3 bits (65), Expect = 0.93
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
 Frame = +1

Query: 106 DNEIPRDIDDGK----ASSVISRAWDYVDDTDKSIAILNVQEILKDMASQGDYAVKHQRW 273
           D +  +D DD      A+ V++   DY DD D    ++NV+ +L   AS   Y  KH   
Sbjct: 49  DYDEVKDNDDNNVGDLANGVVADENDYDDDCDNYDYLINVEGLLYMNASLWKYMEKH--- 105

Query: 274 PKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGP 375
            K  + S  +  +S ++ + P   +T  Q    P
Sbjct: 106 -KVKQDSKAFQLLSKLLVMDPNKRITSEQALQDP 138


>SB_54110| Best HMM Match : Hexapep (HMM E-Value=9.8e-14)
          Length = 729

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -3

Query: 264 MLDCIIALAGHVLQDLLNVEDGDAFVSVIDVV 169
           +LD +  + G  L D ++VEDGDA +  +DVV
Sbjct: 125 LLDDVDVVDGATLLDDVDVEDGDAMLDDVDVV 156


>SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0)
          Length = 1182

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 20/48 (41%), Positives = 24/48 (50%)
 Frame = +3

Query: 270 VAQTAGIIAHLSAGIPGDACXAANVINSYTDGVRSGNFAGFRQSLGXF 413
           VAQ AG IA LSA   G+A     +IN   + V S N     Q +G F
Sbjct: 364 VAQLAGSIAELSAYHHGEASLMGTIINLAENFVGSNNI-NLLQPVGQF 410


>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
          Length = 2990

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +1

Query: 55   VATSAYAAPSVTINQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEI 222
            V++ AY A  VTI +YSD      I++ + S      W+  DD   ++  LN+ ++
Sbjct: 2786 VSSKAYGA-RVTIGKYSDRAGKAAIENVEFSLCGQEGWNDWDDPRYALTYLNLDDV 2840


>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3297

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 310  VSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSSXTLXKT 435
            +S +   QP T+ T   T +   +SP+S +  +P + T+ KT
Sbjct: 1826 ISSMASAQPTTAETTASTPTSITSSPSSPSTILPETRTIPKT 1867


>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 310  VSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSS 417
            V+P       T + +T+TA+GPET+ AS+    P +
Sbjct: 1370 VAPKSTTLASTVVPITETAAGPETTLASETTMAPKT 1405


>SB_38688| Best HMM Match : TP901-1_ORF40 (HMM E-Value=1.7)
          Length = 576

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
 Frame = +1

Query: 106 DNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILN------VQEILKDMASQGDYAVKHQ 267
           D EI R+ D   A SV   +   VD +D S  I+        Q  L    S G Y    Q
Sbjct: 80  DTEINREYDFSGAKSVKKTSITLVDYSDGSNKIVENTKTDLPQSGLLGKISSGSYVGGRQ 139

Query: 268 RWPKPPELSPIYLPVSPVMPVQP 336
             P P   SP     +   PV P
Sbjct: 140 ALPPPSRWSPHITHKNETQPVGP 162


>SB_38050| Best HMM Match : Hexapep (HMM E-Value=0.04)
          Length = 324

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -3

Query: 276 GPPLMLDCIIALAGHVLQDLLNVEDGDAFVSVIDVV 169
           G PL LD +  + G  L D +NV DGD  +  +DVV
Sbjct: 147 GDPL-LDDVDVVDGVTLLDDVNVVDGDPLLDDVDVV 181


>SB_34483| Best HMM Match : Hexapep (HMM E-Value=0.0027)
          Length = 323

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -3

Query: 276 GPPLMLDCIIALAGHVLQDLLNVEDGDAFVSVIDVV 169
           G PL LD +  + G  L D +NV DGD  +  +DVV
Sbjct: 146 GDPL-LDDVDVVDGVTLLDDVNVVDGDPLLDDVDVV 180


>SB_19312| Best HMM Match : DEP (HMM E-Value=2.5e-09)
          Length = 678

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +1

Query: 211 VQEILKDMASQGDYAVKHQRWPKPPELSPIYLPVSPVMPVQPLTSLTLTQTAS 369
           +++ LKD   QGD+         PP + P +L     + + PLTS TL   AS
Sbjct: 278 MEQQLKDF--QGDWVEIAFTQYAPPSVIPAFLAPDSALEMIPLTSPTLRSLAS 328


>SB_18191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = +1

Query: 214 QEILKDMASQGDYAVKHQRWPKPPELSP--IYLPVSPVMPVQPLTSLTL-TQTASG-PET 381
           +++LK    +  +  KH RW    E  P   Y+ +  + P    T  ++ +QT +G P+T
Sbjct: 64  EQVLKPCKGRTTWGAKHDRWDSSQETDPGASYILLWDIHPAGEFTRFSIQSQTTAGRPKT 123


>SB_36300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +1

Query: 82  SVTINQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQE-ILKDMASQGD 249
           +VT   +SD +  +   D KA+++ S    YV++    +   N+QE IL D  ++G+
Sbjct: 15  AVTSVDFSDPQGGKGACDRKAATIKSHIRQYVNEGHDVVTAANLQEAILADGGARGE 71


>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
          Length = 509

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 184 CHR-RSPMHVRLRN*LFHHQCRVEFHYH 104
           CHR R   H+RL   L +H+ R+  H+H
Sbjct: 440 CHRPRLSNHLRLSRHLHYHRRRLSIHHH 467


>SB_5677| Best HMM Match : fn3 (HMM E-Value=0.0092)
          Length = 1146

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 265  QRWPKPPELSPIYLPVSPVMPVQPLTSL 348
            Q+ P+PP+ + I  P  P M  QP++SL
Sbjct: 974  QQTPQPPQPAQIMRPAHPQMISQPVSSL 1001


>SB_53106| Best HMM Match : PLAT (HMM E-Value=0)
          Length = 1790

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 220  ILKDMASQGDYAVKHQRWPKPPELSPIYLPVSPVMPVQP 336
            ++  +A +  Y  K+ RW   P+ +PI +P+   MP  P
Sbjct: 1139 VVYHIARKERYVFKNNRWIGGPDPTPIDIPLESQMPDIP 1177


>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 352  LTQTASGPETSPASDNLSVPSSXTLXKT 435
            L +T + PET+P     + P + TL KT
Sbjct: 2970 LPKTTAAPETTPLPKTTAAPETTTLPKT 2997


>SB_997| Best HMM Match : Hexapep (HMM E-Value=6.8e-15)
          Length = 916

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 276 GPPLMLDCIIALAGHVLQDLLNVEDGDAFVSVIDVV 169
           G PL LD +  + G  L D ++V DGD  +  +DVV
Sbjct: 450 GDPL-LDDVDVVDGDTLLDDVDVVDGDTLLDDVDVV 484


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,335,982
Number of Sequences: 59808
Number of extensions: 275893
Number of successful extensions: 1378
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)