Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0429
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 29 0.59
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ... 29 0.59
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c... 29 0.78
SPAC1556.03 |azr1||serine/threonine protein phosphatase Azr1|Sch... 29 0.78
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 27 1.8
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 27 2.4
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch... 27 3.1
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 27 3.1
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 27 3.1
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar... 26 5.5
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster... 26 5.5
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 25 9.6
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.6
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 25 9.6
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 29.1 bits (62), Expect = 0.59
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -3
Query: 551 IRRNIIISPASTPSARQCEKHLLMLRS*HYWGLP 450
I N+++SP+ST SA +KH+ +R +GLP
Sbjct: 1035 IETNVMLSPSSTTSAEPLQKHI--VRKSGIFGLP 1066
>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 425
Score = 29.1 bits (62), Expect = 0.59
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = -1
Query: 151 LSEKQGLFANTILSTNTSRRKSPSSCLAIFNYGNGKN 41
L ++ ++T L+ ++S + PSS + F++GNGK+
Sbjct: 321 LRKRANQVSSTSLTKSSSPKPLPSSAIVKFDFGNGKS 357
>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 433
Score = 28.7 bits (61), Expect = 0.78
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 368 GCLPTKIVMGEATIDMTKEFVXARKKFLEDPSNVSYEALKDAFRIV 505
GCL + AT+D+ K FL+ N + EA+++AF ++
Sbjct: 289 GCLVNGAGLAMATMDIIKLHGGEPANFLDVGGNANAEAIREAFSLI 334
>SPAC1556.03 |azr1||serine/threonine protein phosphatase
Azr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 28.7 bits (61), Expect = 0.78
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 109 TNTSRRKSPSSCLAIFNYGNGKNRILYL 26
+NT S ++CL +FN GNGK L L
Sbjct: 120 SNTVEAGSSTACLTLFNCGNGKLHSLNL 147
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 27.5 bits (58), Expect = 1.8
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +2
Query: 299 EADINKAMSKFPIKVTVYKSLPCGCLPTKIVMGEATID-MTKEFVXARKKFLEDPSN--V 469
E D K M+K + T + SL GCL + + +A +D M K + + +D N
Sbjct: 58 EEDYAKRMAK--LSRTTFSSLETGCLKESVQVMKAEVDNMAKSHLQISQLLQDDVENAFT 115
Query: 470 SYEA-LKDAFRIV 505
Y A LKD +++
Sbjct: 116 RYAASLKDKKKMI 128
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 27.1 bits (57), Expect = 2.4
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = -1
Query: 460 GVFQKLFPCXYKFFCHVYCCFSHYYLC 380
G+ + ++ C +C V CC Y +C
Sbjct: 149 GMKENIYTCLKDLYCSVSCCDCRYGIC 175
>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
3|||Manual
Length = 872
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +1
Query: 172 ILSVHRSSLWRYAMTIQELALLKVVD 249
I S+H+SSL Y T++E+A L ++D
Sbjct: 792 IHSLHQSSLLPYFKTLKEIAHLFIID 817
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 26.6 bits (56), Expect = 3.1
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Frame = -1
Query: 247 PPLLTTQAPGSSSHISRGSTDGHSIFTHVLKSLSEKQGLF--ANTILSTNTSRRKSPSSC 74
PP T S + S DGH F + + S++ + AN + ST S +
Sbjct: 27 PPRFTLIVSFYSMNTSENDPDGHYDFPEMTEHHSDRASSYANANNVNSTQPQLVSSEQAL 86
Query: 73 LAIFNYG 53
LAI G
Sbjct: 87 LAILGGG 93
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/54 (25%), Positives = 22/54 (40%)
Frame = -3
Query: 194 LDRWTLNIHTCSKIFVRKTRAFCEYNFINQHFKKKKSIILFSHFQLWEWEKQNF 33
L +W + KI V + F NF+ K+K + H +W W+ F
Sbjct: 414 LYQWMIKAMNLRKIHVWE---FSRMNFVRTLLSKRKLTEIVDHGLVWGWDDPRF 464
>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 341
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 496 SHCRADGVEAGEIIMFLRISCFGKLIITRFQGAGPPNLSSAGNSSVVD 639
+HC V +G+ I +++SC KLI+T P ++ +G ++D
Sbjct: 272 THC----VLSGDAIERVKLSCIDKLIVT---NTAPQTITPSGCFDIID 312
>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 138 CFSDKDFR-TCVNIECPSVEPLEICDDDPGACVVKSGGPFLKHSI 269
CF + F+ T E L IC+ D CV++S P+++H I
Sbjct: 277 CFVNPIFQNTDTEYEANMEVWLSICEIDALECVLRSCQPWVQHDI 321
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -2
Query: 657 SRITRSINDRRISRATEVWWSGSLKSSDDQFPKTGYTKKHYN 532
SRI + + + VW+ GS+ +S D F +K+ Y+
Sbjct: 374 SRINVHTAETASATSNAVWFGGSILASLDNFQHLWVSKQEYD 415
>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 511
Score = 25.0 bits (52), Expect = 9.6
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 343 YFYRKLGHSFIYISLF 296
YF+R LGH ++Y+ F
Sbjct: 208 YFHRILGHLWLYVGFF 223
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 174 IECPSVEPLEICDDDPGACVVKSGGPFLKHSIAANHV 284
IEC SV+ D P C+ + P K S NH+
Sbjct: 745 IECCSVDDCTCTHDAPEECLEWANPPVQKLSTPHNHL 781
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,893,321
Number of Sequences: 5004
Number of extensions: 63330
Number of successful extensions: 186
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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