Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0429
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5863| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.62 
SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9)             29   2.5  
SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)                   29   3.3  
SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)               29   3.3  
SB_32577| Best HMM Match : PH (HMM E-Value=7e-17)                      29   3.3  
SB_20802| Best HMM Match : Phage_integr_N (HMM E-Value=1.2)            29   4.4  
SB_55426| Best HMM Match : SH3_1 (HMM E-Value=1.90002e-41)             28   5.8  
SB_27469| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-08)                 28   5.8  
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              28   7.7  

>SB_5863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 629

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
 Frame = +2

Query: 263 FNSGKSCLFSLKEADINKAMSKFPIKVTVYKSLPCGCLPTKIVMGEATIDMTKE----FV 430
           FN GKSCLF +   D+++ +   PI V +    P      K++ G  TI + +       
Sbjct: 68  FNKGKSCLFRMNVEDLHQKLQVTPIYVMLVDVWP---KKPKLI-GSTTIPLKRSIDRIID 123

Query: 431 XARKKFLEDPSNVSYEALKDAFRIVGPMVLK 523
             +K  +  PS    E   D F ++G  V K
Sbjct: 124 DVKKNGVSVPSFSKEENKFDIFNLMGSKVGK 154


>SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9)
          Length = 492

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 481 CFVADITGVFQKLFPCXYKFFCHVYCCFSHYY 386
           CF   + GVF+ ++P  +  F  V  CF + Y
Sbjct: 5   CFSRCLPGVFRYVYPVYFTLFTFVSLCFRYVY 36


>SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)
          Length = 3083

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 8/40 (20%), Positives = 18/40 (45%)
 Frame = -3

Query: 122  YNFINQHFKKKKSIILFSHFQLWEWEKQNFIFILFCNMWF 3
            +N   +     + ++   H Q W+W  +  I ++F   W+
Sbjct: 2743 FNLTKEIVDLSRPVVGLKHDQYWDWLSKQIIHMIFVGFWY 2782


>SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 1354

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 563  PKQDIRRNIIISPASTPSARQCEKHL 486
            P   +  NI +SP S+P + QC +++
Sbjct: 982  PSSSVEENIYVSPRSSPVSEQCSEYI 1007


>SB_32577| Best HMM Match : PH (HMM E-Value=7e-17)
          Length = 1248

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 563 PKQDIRRNIIISPASTPSARQCEKHL 486
           P   +  NI +SP S+P + QC +++
Sbjct: 758 PSSSVEENIYVSPRSSPVSEQCSEYI 783


>SB_20802| Best HMM Match : Phage_integr_N (HMM E-Value=1.2)
          Length = 566

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -2

Query: 315 LFISASFREKRHDLPLLNVLKKVHHF*QRKLLDRHRISPE 196
           LF+S   RE+R ++   ++LKK  HF   + +DR  +S E
Sbjct: 356 LFLSHGEREQRSNMQ--HILKKWEHFCSERQIDRTEVSVE 393


>SB_55426| Best HMM Match : SH3_1 (HMM E-Value=1.90002e-41)
          Length = 689

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -2

Query: 624 ISRATEVWWSGSLKSSDDQFPKTGYTK 544
           I    + WWSG L      FPKT Y K
Sbjct: 162 IKEQQDTWWSGELNGKKGWFPKT-YVK 187


>SB_27469| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-08)
          Length = 341

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = -2

Query: 399 SPITIFVGKQPQGRDLYTVTFIGNLDIALFISASFREKRHDLPLLNV 259
           +P+ I +G Q    +   + F  +L +A+F+S SFR K+    L+N+
Sbjct: 9   TPLNILIGVQFV--EAVLIIFANSLALAVFLSKSFRVKKSTYFLINL 53


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -1

Query: 436 CXYKFFCHVYCCFSHYYLCW*TTAR-KRFIHCYFY 335
           C   ++C+ YC +  YY C+        + +CY+Y
Sbjct: 474 CYCYYYCYCYCYYYCYYYCYCYCYYCCYYCYCYYY 508


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,027,892
Number of Sequences: 59808
Number of extensions: 448903
Number of successful extensions: 1276
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)