Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0429
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical ...    34   0.10 
U00044-7|AAA50675.1|  990|Caenorhabditis elegans Hypothetical pr...    30   1.3  
L10986-7|AAA28014.2|  362|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z92786-7|CAB07209.1|  145|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z32683-3|CAA83620.1|  124|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U41994-7|AAY55868.1|  155|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AF440508-1|AAL34096.1|  144|Caenorhabditis elegans SKR-5 protein.      27   8.9  
AF040643-12|AAB94964.2|  658|Caenorhabditis elegans Hypothetical...    27   8.9  

>AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical
           protein R155.3 protein.
          Length = 1165

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
 Frame = +2

Query: 248 TFFKTFNSGKSCLFSLKEADINKAMSKFPIKVTVYKSLPCGCLPTKIVMGEATIDMTKEF 427
           T+ +T +  K   +S KE   N  +    ++     S+    LP+K   G+  IDM   F
Sbjct: 68  TYTQTLSLVKYNNYSQKETVKNSEVVYSSLQKVYTSSIALSELPSKASNGDKIIDMLNSF 127

Query: 428 VXARKKFLEDPSNVS--YEALKDAFRIVGPMVLK 523
             + K   ED  ++   YE LK     V  + LK
Sbjct: 128 EKSIKSLTEDSPSIGTLYELLKSRHLRVSSVALK 161


>U00044-7|AAA50675.1|  990|Caenorhabditis elegans Hypothetical
           protein K04C2.2 protein.
          Length = 990

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 594 GSLKSSDDQFPKTGYTKKHYNFSRFNTIGPTMRKASFNAS 475
           GS++ SDDQ+PK     K  +F+      P + KAS  +S
Sbjct: 212 GSIQFSDDQYPKILAALKRCDFATVQVFLPLLIKASVESS 251


>L10986-7|AAA28014.2|  362|Caenorhabditis elegans Hypothetical
           protein F10E9.3 protein.
          Length = 362

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 265 ECFKKGPPLLTTQAPGSSSHISRGSTDGHS 176
           E F+K PP   + APGS S  S G++   S
Sbjct: 236 ENFRKVPPSAVSPAPGSGSSASSGTSTSSS 265


>Z92786-7|CAB07209.1|  145|Caenorhabditis elegans Hypothetical
           protein F47H4.10 protein.
          Length = 145

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 139 QGLFANTILS-TNTSRRKSPSSCLAIFNYGNGKN 41
           +GLF  T  S  N+ + KSP    A+FN GN  N
Sbjct: 110 KGLFNVTCKSIANSIKGKSPEEIRAVFNLGNETN 143


>Z32683-3|CAA83620.1|  124|Caenorhabditis elegans Hypothetical
           protein R07E5.5 protein.
          Length = 124

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 302 ADINKAMSKFPIKVTVYKSLPC 367
           AD+ KA+S +  K T+YK L C
Sbjct: 53  ADVEKALSVYKEKDTIYKCLQC 74


>U41994-7|AAY55868.1|  155|Caenorhabditis elegans Hypothetical
           protein F59A6.10 protein.
          Length = 155

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 141 FSDKDFRTCVNIECPSVEPLEICDDDPGACV 233
           F D D  TC++  CP   P   CD+ PG CV
Sbjct: 17  FCDAD--TCIDKFCP---PGTFCDERPGPCV 42


>AF440508-1|AAL34096.1|  144|Caenorhabditis elegans SKR-5 protein.
          Length = 144

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 139 QGLFANTILS-TNTSRRKSPSSCLAIFNYGNGKN 41
           +GLF  T  S  N+ + KSP    A+FN GN  N
Sbjct: 109 KGLFNVTCKSIANSIKGKSPEEIRAVFNLGNETN 142


>AF040643-12|AAB94964.2|  658|Caenorhabditis elegans Hypothetical
           protein F14D2.9 protein.
          Length = 658

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 197 RLDRWTLNIHTCSKIFVRKTRAFCEYNF 114
           RLDR  L+I+ C+    + +R F  Y F
Sbjct: 89  RLDRMFLHIYLCTSFIEKHSRRFLAYGF 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,997,306
Number of Sequences: 27780
Number of extensions: 355080
Number of successful extensions: 1009
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)