Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0429
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   4.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   5.9  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    21   7.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 407 IDMTKEFVXARKKFLEDPSNVSYEALKDAFRIV 505
           I+  KE +      LED SN+   A  + F I+
Sbjct: 422 INAAKELIFQIANELEDASNIPVHATLEKFMIL 454


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 387 IFVGKQPQGRDLYTVTFIG 331
           IF   QP  +D YTV  +G
Sbjct: 435 IFANNQPYTKDSYTVAGMG 453


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = -3

Query: 212 IAYLQRLDRWTLNIHTCSKIFVRKTRAFCEYNFINQHFKKKKSIIL 75
           ++Y++  + W L    C+ IF+    A  E+ F+N  +++KK++ L
Sbjct: 288 VSYIKASEIWFLG---CT-IFL--FAAMVEFAFVNTIYRRKKTVPL 327


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
 Frame = -1

Query: 109 TNTSRRKSP---SSCLAIFNYGNGKNRILYLYYFVI 11
           T   + K P   SS    +NY N  N    LYY +I
Sbjct: 304 TEREKSKEPKIISSLSNNYNYNNYNNNYKPLYYNII 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,989
Number of Sequences: 438
Number of extensions: 4716
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)